CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88736
KRG88739
KRG96154
KRH05542
KRH05543
KRH06183
KRH30830
KRH32671
KRH47599
KRH67865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	KRG88736	AT2G22840.1	15326298
AT5G28640.1	KRG88739	AT2G22840.1	15326298
AT5G28640.1	KRH05542	AT2G22840.1	15326298
AT5G28640.1	KRH05543	AT2G22840.1	15326298
AT5G28640.1	KRH06183	AT3G13960.1	15960617
AT5G28640.1	KRH47599	AT3G13960.1	15960617
AT5G28640.1	KRG96154	AT3G52910.1	15960617
AT5G28640.1	KRH30830	AT3G52910.1	15960617
AT5G28640.1	KRH32671	AT3G52910.1	15960617
AT5G28640.1	KRH67865	AT3G52910.1	15960617
AT5G28640.1	KRG88736	AT4G37740.1	15326298
AT5G28640.1	KRG88739	AT4G37740.1	15326298
AT5G28640.1	KRH05542	AT4G37740.1	15326298
AT5G28640.1	KRH05543	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92707	Soybean	nucleus	94.34	94.34
KRG97010	Soybean	nucleus	69.81	70.48
VIT_14s0081g00200.t01	Wine grape	nucleus	74.06	70.4
Bra036131.1-P	Field mustard	nucleus	66.04	68.97
Solyc04g009820.2.1	Tomato	nucleus	67.45	68.75
Bra010002.1-P	Field mustard	nucleus	65.57	68.47
Bra020616.1-P	Field mustard	nucleus	65.09	67.65
CDY33883	Canola	nucleus	65.09	67.32
CDY05600	Canola	nucleus	65.09	66.99
PGSC0003DMT400065405	Potato	nucleus	67.45	66.82
AT5G28640.1	Thale cress	nucleus	66.04	66.67
CDY00027	Canola	nucleus	62.26	65.02
CDY57020	Canola	nucleus	62.26	65.02
PGSC0003DMT400002573	Potato	nucleus	67.45	64.13
Solyc11g006230.1.1	Tomato	nucleus	66.04	63.06
GSMUA_Achr10P...	Banana	nucleus	55.19	54.67
GSMUA_Achr8P20680_001	Banana	nucleus	54.25	53.0
CDX86202	Canola	endoplasmic reticulum, extracellular	23.58	52.08
KRH68767	Soybean	cytosol	62.74	51.75
TraesCS4B01G064000.1	Wheat	nucleus	50.47	47.56
TraesCS4D01G062900.1	Wheat	nucleus	50.0	47.11
GSMUA_Achr9P10760_001	Banana	cytosol	52.36	46.25
TraesCS4A01G250600.1	Wheat	nucleus	49.06	46.02
Os03t0733600-01	Rice	nucleus	48.58	45.37
EER90925	Sorghum	nucleus	47.64	44.89
Zm00001d033905_P001	Maize	nucleus	45.75	42.73
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	47.64	41.06
KRH06396	Soybean	cytosol	35.38	35.71
KRH47827	Soybean	cytosol	35.85	35.68
KRH44608	Soybean	cytosol	23.11	30.06
KRH53598	Soybean	nucleus	25.47	27.69

Protein Annotations

EMBL:ACUP02006582	EnsemblPlants:KRH34114	EnsemblPlantsGene:GLYMA_10G164100	EntrezGene:100787707	GO:GO:0003674	GO:GO:0003713
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506
GO:GO:1903508	InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF6	PFAM:PF05030	ProteinID:KRH34114
ProteinID:KRH34114.1	SEG:seg	UniParc:UPI00018C588F	UniProt:I1LBN5	MapMan:15.5.52.2	:

Description

hypothetical protein

Coordinates

chr10:+:39822153..39825768

Molecular Weight (calculated)

22657.6 Da

IEP (calculated)

6.224

GRAVY (calculated)

-0.592

Length

212 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAAYYPNNV TTDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQSRLQR NLMYLAAIAD SQPQPSPLAG QYPSSGLVQQ GAHYMQAQQA
101: QQMSQQQLMA SRSSLLYSQQ PFSVLQQQQG MHSQLGMSSS GSQGLHMLQS EATNVGGNAT IGTGGGFPDF VRIGSGKQDI GISGEGRGGN SSGHSGDGGE
201: TLNYLKAAGD GN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.