Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34114 | Soybean | nucleus | 70.4 | 74.06 |
| KRG92707 | Soybean | nucleus | 69.06 | 72.64 |
| KRG97010 | Soybean | nucleus | 65.47 | 69.52 |
| VIT_07s0005g02950.t01 | Wine grape | nucleus | 61.88 | 61.61 |
| GSMUA_Achr10P... | Banana | nucleus | 57.4 | 59.81 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 55.61 | 57.14 |
| KRH68767 | Soybean | cytosol | 58.74 | 50.97 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 54.26 | 50.42 |
| Os03t0733600-01 | Rice | nucleus | 49.33 | 48.46 |
| TraesCS4B01G064000.1 | Wheat | nucleus | 47.98 | 47.56 |
| TraesCS4D01G062900.1 | Wheat | nucleus | 47.53 | 47.11 |
| EER90925 | Sorghum | nucleus | 47.09 | 46.67 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 47.09 | 46.46 |
| Zm00001d033905_P001 | Maize | nucleus | 44.39 | 43.61 |
| HORVU4Hr1G010610.1 | Barley | cytosol, mitochondrion, nucleus | 45.29 | 41.06 |
| VIT_16s0098g01110.t01 | Wine grape | cytosol, mitochondrion, nucleus | 35.87 | 39.6 |
| VIT_15s0048g02770.t01 | Wine grape | nucleus | 37.22 | 37.39 |
Protein Annotations
| EntrezGene:100253609 | wikigene:100253609 | MapMan:15.5.52.2 | ProteinID:CCB58722 | ProteinID:CCB58722.1 | UniProt:F6HVK9 |
| EMBL:FN596256 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903506 | GO:GO:1903508 | EntrezGene:LOC100253609 | wikigene:LOC100253609 |
| PFAM:PF05030 | PANTHER:PTHR23107 | PANTHER:PTHR23107:SF6 | InterPro:SS18_fam | TIGR:TC64005 | UniParc:UPI0001984B21 |
| ArrayExpress:VIT_14s0081g00200 | EnsemblPlantsGene:VIT_14s0081g00200 | EnsemblPlants:VIT_14s0081g00200.t01 | unigene:Vvi.15275 | RefSeq:XP_002263259 | RefSeq:XP_002263259.1 |
| RefSeq:XP_010660136.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr14:-:7831320..7854000
Molecular Weight (calculated)
23499.6 Da
IEP (calculated)
6.137
GRAVY (calculated)
-0.622
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQHLMQMQP MMAAYYPSNV TTDHIQQYLD ENKSLILKIV ESQNSGKLTE CAENQARLQR NLMYLAAIAD SQPQPPTMHA QFPPSGIVQP GAHYMQHQQA
101: QQMTPQSLLA ARSSMLYSQQ PFSALQQQQA IHSQLGMGSG GSAGLHMLQS EGSNPGGNGT LGTGGFPDFS RGTSGEGLQA AGRGMAGGSK QDMGNAEGRG
201: GNSGGQGGDG GETLYLKAAE DGN
101: QQMTPQSLLA ARSSMLYSQQ PFSALQQQQA IHSQLGMGSG GSAGLHMLQS EGSNPGGNGT LGTGGFPDFS RGTSGEGLQA AGRGMAGGSK QDMGNAEGRG
201: GNSGGQGGDG GETLYLKAAE DGN
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
Arabidopsis Description
GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.