Factsheet for Solyc02g092070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g009820.2.1
Solyc11g006230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Solyc04g009820.2.1	AT5G28640.1	15326298
AT2G22840.1	Solyc11g006230.1.1	AT5G28640.1	15326298
AT4G37740.1	Solyc04g009820.2.1	AT5G28640.1	15326298
AT4G37740.1	Solyc11g006230.1.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055151	Potato	nucleus	92.08	87.31
CDY55116	Canola	nucleus	27.46	55.32
CDY66422	Canola	nucleus	28.17	51.12
CDX83200	Canola	nucleus	33.45	48.22
VIT_00s0494g00010.t01	Wine grape	nucleus	50.18	47.74
CDY29584	Canola	nucleus	32.75	45.59
Bra017851.1-P	Field mustard	nucleus	35.04	44.52
CDX72654	Canola	nucleus	34.33	44.12
Bra000575.1-P	Field mustard	nucleus	39.44	43.24
CDX75672	Canola	nucleus	34.15	43.02
Bra011781.1-P	Field mustard	nucleus	34.15	43.02
AT2G22840.1	Thale cress	nucleus	38.91	41.7
CDX69322	Canola	nucleus	33.8	41.65
AT4G37740.1	Thale cress	nucleus	37.68	40.0
Solyc04g077510.2.1	Tomato	nucleus	41.73	39.83
CDY21475	Canola	nucleus	27.99	31.99
Solyc08g068760.1.1	Tomato	cytosol	8.45	30.97
Solyc08g005430.2.1	Tomato	nucleus	18.66	29.78
Solyc09g009200.1.1	Tomato	nucleus	19.89	29.66
Solyc12g096070.1.1	Tomato	nucleus	17.96	29.57
Solyc07g041640.2.1	Tomato	nucleus	17.43	28.78
Solyc08g075950.1.1	Tomato	nucleus	17.78	27.98
Solyc08g079800.2.1	Tomato	nucleus	10.56	27.52
Solyc10g083510.1.1	Tomato	nucleus	18.66	27.25
Solyc03g082430.1.1	Tomato	nucleus	18.66	23.14
Solyc08g083230.1.1	Tomato	nucleus	15.67	22.36
Solyc01g091540.1.1	Tomato	nucleus	16.02	21.67

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4BD04	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	EnsemblPlantsGene:Solyc02g092070.2
EnsemblPlants:Solyc02g092070.2.1	UniParc:UPI0002767D5C	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:53277427..53281971

Molecular Weight (calculated)

61370.7 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.510

Length

568 amino acids

Sequence
(BLAST)

001: MDFGGLMTME TAQQSETSNG SGQLKQQRSD DNIWRPSKVP KPADDLSAYC KQQGPTSTLF MRSDSPNDGR GHSTMLSFSS NKSEEIPFLS TNNVSAQDSS
101: TNLPFPLFDS GSYNTRAASA YASGGSNENT PGSFSRFRGP FTPSQWMELE HQALIYKHFV ANIPVPHHLL IPIKKSVNPY AFSGLSAVPY ASSNWGWGTF
201: HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI NRGRHRSRKH VEVQNGHAVS GSTTSKVASV APSSSATVIS SSGTLLNSGG ASNSLGTVQQ
301: QLNSLQPSAA NPNTEQLVNR MLGHRGASVI SPTICVKPKD SAISVQKQHN GVELSSLTDF GLVSSDSLLN PSQRNSFVNP KNPIAFLNFN DQERSEQHPV
401: HHFIDGWAKE QSSRASTCWP DQLKDWTQLS MSIPMTASDF ASSSSSPRQE KLTLSPLRVS CNVDPIQMGL GMTSSCGEPM QKTASWVPVC WEHSLGGPLG
501: EVLNSTAGVL QKTTFVSLSN SSSGSSPRGD SKKVHDGIGM CDEVIGLTVA SSVCIPSMEV SCLIKNKH

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.