Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37740.1 | CDX86202 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY00027 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY05600 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY33883 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY57020 | AT5G28640.1 | 15326298 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011781.1-P | Field mustard | nucleus | 99.56 | 99.56 |
| CDX69322 | Canola | nucleus | 95.79 | 93.71 |
| CDX72654 | Canola | nucleus | 73.17 | 74.66 |
| CDY55116 | Canola | nucleus | 45.9 | 73.4 |
| CDY29584 | Canola | nucleus | 66.3 | 73.28 |
| CDY66422 | Canola | nucleus | 48.78 | 70.29 |
| AT4G37740.1 | Thale cress | nucleus | 80.93 | 68.22 |
| CDX83200 | Canola | nucleus | 48.34 | 55.33 |
| GSMUA_Achr4P32310_001 | Banana | nucleus | 14.19 | 44.14 |
| CDY21475 | Canola | nucleus | 47.23 | 42.86 |
| VIT_00s0494g00010.t01 | Wine grape | nucleus | 48.34 | 36.52 |
| KRG88739 | Soybean | nucleus | 46.12 | 35.02 |
| Zm00001d007465_P001 | Maize | nucleus | 24.17 | 34.94 |
| KRH05542 | Soybean | nucleus | 46.12 | 34.67 |
| KRG88736 | Soybean | nucleus | 45.9 | 34.56 |
| KRH05543 | Soybean | nucleus | 46.34 | 34.32 |
| Solyc02g092070.2.1 | Tomato | nucleus | 43.02 | 34.15 |
| PGSC0003DMT400055151 | Potato | nucleus | 45.23 | 34.06 |
| GSMUA_Achr3P15140_001 | Banana | nucleus | 36.59 | 33.81 |
| HORVU4Hr1G037480.5 | Barley | nucleus | 23.95 | 32.93 |
| Os12t0484900-01 | Rice | nucleus, plastid | 29.71 | 32.45 |
| GSMUA_Achr1P27000_001 | Banana | nucleus | 30.38 | 32.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.39 | 32.26 |
| KXG28671 | Sorghum | nucleus | 25.94 | 31.54 |
| Os03t0729500-01 | Rice | nucleus | 31.71 | 31.36 |
| GSMUA_Achr8P04970_001 | Banana | nucleus | 38.36 | 29.78 |
| CDY28823 | Canola | nucleus | 22.17 | 28.82 |
| CDY51791 | Canola | nucleus | 20.84 | 28.75 |
| GSMUA_Achr7P27480_001 | Banana | nucleus | 38.14 | 28.34 |
| EER90936 | Sorghum | nucleus | 37.47 | 28.12 |
| Zm00001d033396_P003 | Maize | nucleus | 27.05 | 27.85 |
| Zm00001d033876_P004 | Maize | nucleus | 36.59 | 27.82 |
| HORVU4Hr1G003440.12 | Barley | nucleus | 25.06 | 27.7 |
| Zm00001d006338_P002 | Maize | mitochondrion | 16.85 | 27.34 |
| TraesCS4D01G059600.1 | Wheat | nucleus | 34.59 | 26.99 |
| EER93679 | Sorghum | nucleus | 25.72 | 26.67 |
| CDX79674 | Canola | nucleus | 21.73 | 26.63 |
| CDX84560 | Canola | nucleus | 21.73 | 26.63 |
| HORVU4Hr1G010080.2 | Barley | nucleus | 35.92 | 26.6 |
| TraesCS4A01G255000.1 | Wheat | nucleus | 35.7 | 26.52 |
| CDX75039 | Canola | nucleus | 22.62 | 26.49 |
| TraesCS4A01G291500.1 | Wheat | nucleus | 23.95 | 26.47 |
| CDX84126 | Canola | nucleus | 22.84 | 26.28 |
| TraesCS4B01G060000.1 | Wheat | nucleus | 35.48 | 26.19 |
| Zm00001d013346_P001 | Maize | nucleus | 33.92 | 26.15 |
| Os03t0674700-01 | Rice | nucleus | 24.61 | 26.06 |
| TraesCS4D01G020300.1 | Wheat | nucleus | 23.73 | 25.78 |
| CDY13333 | Canola | nucleus | 20.84 | 25.68 |
| CDX67545 | Canola | nucleus | 20.62 | 25.55 |
| CDX78132 | Canola | nucleus | 21.29 | 25.46 |
| CDX73595 | Canola | nucleus | 21.51 | 25.46 |
| Zm00001d013555_P001 | Maize | nucleus | 24.39 | 25.23 |
| CDY72447 | Canola | nucleus, plastid | 18.85 | 24.71 |
| CDY70432 | Canola | nucleus | 13.08 | 24.28 |
| CDY43721 | Canola | nucleus | 19.07 | 24.23 |
| CDY03485 | Canola | nucleus | 18.63 | 24.14 |
| CDY10989 | Canola | nucleus | 18.85 | 22.61 |
| CDX92617 | Canola | nucleus | 19.73 | 21.87 |
| CDX76249 | Canola | nucleus | 19.51 | 21.52 |
| CDY33407 | Canola | nucleus | 17.52 | 19.75 |
| CDX82503 | Canola | nucleus | 15.74 | 19.4 |
| CDX71979 | Canola | nucleus | 16.41 | 19.22 |
| CDX97531 | Canola | nucleus | 16.41 | 19.07 |
| CDY55209 | Canola | nucleus | 16.41 | 18.97 |
| CDY39081 | Canola | nucleus | 16.63 | 18.84 |
| CDX75742 | Canola | nucleus | 15.08 | 18.63 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 3.77 | 17.35 |
| CDY66284 | Canola | nucleus | 19.29 | 16.17 |
| CDY37044 | Canola | nucleus | 14.86 | 15.33 |
| CDY27382 | Canola | nucleus | 15.08 | 15.32 |
| GSMUA_Achr8P26530_001 | Banana | nucleus | 39.91 | 12.55 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078CFW5 | EnsemblPlants:CDX75672 | ProteinID:CDX75672 | ProteinID:CDX75672.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00121599001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF22 | SMART:SM00951 | UniParc:UPI0004EE605A | InterPro:WRC_dom | SEG:seg |
Description
BnaA01g00300D
Coordinates
chrLK031804:-:2248449..2250183
Molecular Weight (calculated)
49440.7 Da
IEP (calculated)
9.578
GRAVY (calculated)
-0.652
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGSVTGNV NGSPSLKELR ESKQDRSGFD GEDCLQQSSK LARTIAEDKH LPSSYAAAYS RPMSFHQGIP LARSASLLSS DSRRQEHMLS FSDKPEAFDF
101: SKYVGLDNNK NSLSPFLHQL PPPYCRTPGG GYGSGGMMMS MQGKGPFTLT QWAELEQQAL IYKYITANVP VPSSLLISIQ KSFYPYRSFP PSSFGWGTFH
201: LGFAGGKMDP EPGRCRRTDG KKWRCSKDAV PDQKYCERHI NRGRHRSRKP VEVQPGQTAA SKAVASRNTA SQSPNNRVQN VIYPSTVNLP PKEQRNNNNS
301: SFGFGHVTSP SLLTSSYLDF SINQNKPEEL KSDWTQLSMS IPVASSSPSS TAQDKTTLSP LRLDLPIQSQ QETLEAARKV NTWIPISWGN SLGGPLGEVL
401: NSTTSSPTLG SSPTGVLQKS TFCSLSNSSS VTSPVADNNR NNNVDYFHYT T
101: SKYVGLDNNK NSLSPFLHQL PPPYCRTPGG GYGSGGMMMS MQGKGPFTLT QWAELEQQAL IYKYITANVP VPSSLLISIQ KSFYPYRSFP PSSFGWGTFH
201: LGFAGGKMDP EPGRCRRTDG KKWRCSKDAV PDQKYCERHI NRGRHRSRKP VEVQPGQTAA SKAVASRNTA SQSPNNRVQN VIYPSTVNLP PKEQRNNNNS
301: SFGFGHVTSP SLLTSSYLDF SINQNKPEEL KSDWTQLSMS IPVASSSPSS TAQDKTTLSP LRLDLPIQSQ QETLEAARKV NTWIPISWGN SLGGPLGEVL
401: NSTTSSPTLG SSPTGVLQKS TFCSLSNSSS VTSPVADNNR NNNVDYFHYT T
001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT
Arabidopsis Description
GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.