Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005268.1-P | Field mustard | nucleus | 97.66 | 96.91 |
| CDX84126 | Canola | nucleus | 96.1 | 94.39 |
| CDX79674 | Canola | nucleus | 82.08 | 85.87 |
| CDY43721 | Canola | nucleus | 78.7 | 85.35 |
| CDX84560 | Canola | nucleus | 81.3 | 85.05 |
| AT2G36400.1 | Thale cress | nucleus | 86.75 | 83.92 |
| CDX67545 | Canola | nucleus | 64.94 | 68.68 |
| CDY13333 | Canola | nucleus | 64.16 | 67.49 |
| CDX78132 | Canola | nucleus | 65.97 | 67.37 |
| CDX73595 | Canola | nucleus | 65.71 | 66.4 |
| CDX76249 | Canola | nucleus | 61.56 | 57.95 |
| KRH30830 | Soybean | nucleus | 45.97 | 52.84 |
| KRH67865 | Soybean | nucleus | 51.69 | 51.82 |
| KRH32671 | Soybean | nucleus | 45.19 | 51.79 |
| KRG96154 | Soybean | nucleus | 51.95 | 51.55 |
| Solyc09g009200.1.1 | Tomato | nucleus | 47.53 | 48.03 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 50.39 | 46.86 |
| Solyc10g083510.1.1 | Tomato | nucleus | 45.97 | 45.5 |
| PGSC0003DMT400072628 | Potato | nucleus | 45.19 | 44.5 |
| CDY66284 | Canola | nucleus | 62.08 | 44.42 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 42.6 | 41.84 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 32.99 | 40.19 |
| CDY55116 | Canola | nucleus | 22.86 | 31.21 |
| CDY51791 | Canola | nucleus | 25.71 | 30.28 |
| CDY28823 | Canola | nucleus | 25.71 | 28.53 |
| CDY66422 | Canola | nucleus | 23.12 | 28.43 |
| CDY70432 | Canola | nucleus | 16.88 | 26.75 |
| CDY29584 | Canola | nucleus | 25.19 | 23.77 |
| CDX83200 | Canola | nucleus | 23.9 | 23.35 |
| CDX75672 | Canola | nucleus | 26.49 | 22.62 |
| CDX72654 | Canola | nucleus | 25.71 | 22.4 |
| CDX69322 | Canola | nucleus | 26.75 | 22.34 |
| CDY72447 | Canola | nucleus, plastid | 19.74 | 22.09 |
| CDY03485 | Canola | nucleus | 19.74 | 21.84 |
| CDX82503 | Canola | nucleus | 20.26 | 21.31 |
| CDY10989 | Canola | nucleus | 20.52 | 21.01 |
| CDX75742 | Canola | nucleus | 19.74 | 20.82 |
| CDX97531 | Canola | nucleus | 20.78 | 20.62 |
| CDY55209 | Canola | nucleus | 20.78 | 20.51 |
| CDX92617 | Canola | nucleus | 21.56 | 20.39 |
| CDY39081 | Canola | nucleus | 20.78 | 20.1 |
| CDX71979 | Canola | nucleus | 20.0 | 20.0 |
| CDY33407 | Canola | nucleus | 20.0 | 19.25 |
| CDY37044 | Canola | nucleus | 21.56 | 18.99 |
| CDY27382 | Canola | nucleus | 21.56 | 18.69 |
| CDY21475 | Canola | nucleus | 22.08 | 17.1 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.26 | 0.59 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078CG21 | EnsemblPlants:CDX75039 | ProteinID:CDX75039 | ProteinID:CDX75039.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00117068001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EE0C14 | InterPro:WRC_dom | SEG:seg |
Description
BnaA05g07850D
Coordinates
chrLK031802:+:2139969..2142594
Molecular Weight (calculated)
42363.1 Da
IEP (calculated)
8.017
GRAVY (calculated)
-0.718
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRS QQQQQTESED QPSAAKIPKH VYDQIQSHTA TSTALPLFSP EPTSSKLSSL SQDSSSRFPK MGSFFSWAQW QELELQALIY RYMLAGAAVP
101: QELLLPIKKS LLHLSPSYFL NHPLQHLPHY QPAWYMGKGA MDPEPGRCRR TDGKKWRCSR DVFPGHKYCE RHMHRGRNRS RKPVETPTVN ATTSTPIAPA
201: SAPATTASLF AFGGGEEVGQ GGGSSCFFFS GSGSSNSSSE LLHLSQSSEL RQGSNNKRPY ESHNGFGNNI SDGGHTLRHF FDDWPRSEAD TGSTPMSSTT
301: CLSISMPVNS SSDVSLKLST GNEEEEARSN NNGRDQQNMI WWNGGGSLPN HHHMGGPLAE VLRSSSSSSP TSVLHQLGVS TQAFH
101: QELLLPIKKS LLHLSPSYFL NHPLQHLPHY QPAWYMGKGA MDPEPGRCRR TDGKKWRCSR DVFPGHKYCE RHMHRGRNRS RKPVETPTVN ATTSTPIAPA
201: SAPATTASLF AFGGGEEVGQ GGGSSCFFFS GSGSSNSSSE LLHLSQSSEL RQGSNNKRPY ESHNGFGNNI SDGGHTLRHF FDDWPRSEAD TGSTPMSSTT
301: CLSISMPVNS SSDVSLKLST GNEEEEARSN NNGRDQQNMI WWNGGGSLPN HHHMGGPLAE VLRSSSSSSP TSVLHQLGVS TQAFH
001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
Arabidopsis Description
GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.