Factsheet for Bra005268.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75039	Canola	nucleus	96.91	97.66
CDX84126	Canola	nucleus	96.39	95.41
Bra023066.1-P	Field mustard	nucleus	81.7	86.14
Bra017240.1-P	Field mustard	nucleus	79.64	85.36
AT2G36400.1	Thale cress	nucleus	87.37	85.18
Bra028541.1-P	Field mustard	nucleus	64.43	68.31
Bra006956.1-P	Field mustard	nucleus	65.21	66.23
KRH30830	Soybean	nucleus	45.88	53.13
KRH67865	Soybean	nucleus	51.8	52.34
KRG96154	Soybean	nucleus	52.06	52.06
KRH32671	Soybean	nucleus	44.85	51.79
Solyc09g009200.1.1	Tomato	nucleus	46.91	47.77
VIT_08s0007g03760.t01	Wine grape	nucleus	50.0	46.86
Solyc10g083510.1.1	Tomato	nucleus	45.62	45.5
PGSC0003DMT400072628	Potato	nucleus	45.1	44.76
Bra019640.1-P	Field mustard	nucleus	61.86	44.61
GSMUA_Achr3P22790_001	Banana	nucleus	42.78	42.35
GSMUA_Achr8P07650_001	Banana	extracellular	33.25	40.82
Bra022667.1-P	Field mustard	nucleus	25.77	28.82
Bra011781.1-P	Field mustard	nucleus	26.8	23.06
Bra017851.1-P	Field mustard	nucleus	26.55	23.04
Bra001532.1-P	Field mustard	nucleus	20.1	21.49
Bra019244.1-P	Field mustard	nucleus	20.36	21.07
Bra027384.1-P	Field mustard	nucleus	21.13	20.97
Bra013767.1-P	Field mustard	nucleus	19.85	20.75
Bra000575.1-P	Field mustard	nucleus	26.8	20.08
Bra015184.1-P	Field mustard	nucleus	19.85	19.25
Bra039334.1-P	Field mustard	nucleus	20.88	19.01
Bra021521.1-P	Field mustard	cytosol	17.27	16.3

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra005268	EnsemblPlants:Bra005268.1	EnsemblPlants:Bra005268.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4CM31	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF39	SMART:SM00951	UniParc:UPI0002547B92	InterPro:WRC_dom	SEG:seg	:

Description

AT2G36400 (E=4e-133) AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR 3); transcription activator

Coordinates

chrA05:+:4422082..4424566

Molecular Weight (calculated)

42733.5 Da

IEP (calculated)

8.267

GRAVY (calculated)

-0.748

Length

388 amino acids

Sequence
(BLAST)

001: MDLQLKQWRS QQKQQTESED QPSAAKIPKH VYDQIQSHTA TSTALPLFSP EPTSSKLSSL SQDSSSRFPK MGSFFSWAQW QELELQALIY RYMLAGAAVP
101: QELLLPIKKS LLHLSPSYFL HHPLQHLPHY QPAWYMGKGA MDPEPGRCRR TDGKKWRCSR DVFPGHKYCE RHMHRGRNRS RKPVETPTVN ATTSTPIAPA
201: SAPATTASLF AFGGGEEVGQ GGGSSCFFFS GSGSSNSSSE LLHLSQSSEL RQGSNNSNNK RPYESHNGFG NNISDGGHTL RHFFDDWPRS EADNSTTPMS
301: STTCLSISMP LNTSSDVSLK LSTGNEEEEA RSNNNGRDQQ NMSWWSGGGS LPNHHHMGGP LAEVLRSSSS SSPTSVLHQL GVSTQAFH

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.