Factsheet for GSMUA_Achr8P07650_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr8P20680_001
GSMUA_Achr9P10760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	GSMUA_Achr10P...	AT5G28640.1	15960617
AT3G52910.1	GSMUA_Achr8P20680_001	AT5G28640.1	15960617
AT3G52910.1	GSMUA_Achr9P10760_001	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P22790_001	Banana	nucleus	67.41	54.34
KRG96154	Soybean	nucleus	46.52	37.89
KRH67865	Soybean	nucleus	45.25	37.24
KRH30830	Soybean	nucleus	38.92	36.72
CDX79674	Canola	nucleus	42.09	36.14
Solyc09g009200.1.1	Tomato	nucleus	43.35	35.96
Bra023066.1-P	Field mustard	nucleus	41.14	35.33
KRH32671	Soybean	nucleus	37.34	35.12
CDX84560	Canola	nucleus	40.82	35.05
VIT_08s0007g03760.t01	Wine grape	nucleus	45.89	35.02
AT2G36400.1	Thale cress	nucleus	43.35	34.42
PGSC0003DMT400072628	Potato	nucleus	42.41	34.27
Solyc10g083510.1.1	Tomato	nucleus	42.09	34.19
CDX67545	Canola	nucleus	39.24	34.07
GSMUA_Achr5P20170_001	Banana	extracellular	18.35	33.92
CDY43721	Canola	nucleus	37.97	33.8
Bra028541.1-P	Field mustard	nucleus	38.92	33.61
AT3G52910.1	Thale cress	nucleus	40.19	33.42
CDY13333	Canola	nucleus	38.61	33.33
Bra005268.1-P	Field mustard	nucleus	40.82	33.25
Bra017240.1-P	Field mustard	nucleus	37.97	33.15
CDX75039	Canola	nucleus	40.19	32.99
CDX84126	Canola	nucleus	40.51	32.65
CDX78132	Canola	nucleus	38.61	32.36
CDX73595	Canola	nucleus	38.61	32.02
Bra006956.1-P	Field mustard	nucleus	37.97	31.41
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	19.3	29.76
GSMUA_Achr4P32310_001	Banana	nucleus	13.29	28.97
GSMUA_Achr8P12060_001	Banana	extracellular	18.35	28.71
CDX76249	Canola	nucleus	37.03	28.61
GSMUA_Achr10P...	Banana	nucleus	25.0	23.44
GSMUA_Achr7P02330_001	Banana	nucleus	24.68	22.67
GSMUA_Achr1P23840_001	Banana	nucleus	25.63	22.56
GSMUA_Achr8P30640_001	Banana	nucleus	22.47	22.19
CDY66284	Canola	nucleus	37.66	22.12
GSMUA_Achr6P01270_001	Banana	nucleus	23.1	21.73
Bra019640.1-P	Field mustard	nucleus	36.71	21.56
GSMUA_Achr1P21940_001	Banana	nucleus	24.37	20.32
GSMUA_Achr1P27000_001	Banana	nucleus	26.9	20.05
GSMUA_AchrUn_...	Banana	nucleus	25.63	19.71
GSMUA_Achr2P04650_001	Banana	extracellular	25.95	19.03
GSMUA_Achr3P15140_001	Banana	nucleus	26.58	17.21
GSMUA_Achr8P04970_001	Banana	nucleus	30.06	16.35
GSMUA_AchrUn_...	Banana	nucleus	17.09	15.84
GSMUA_Achr7P27480_001	Banana	nucleus	29.43	15.32
GSMUA_Achr8P26530_001	Banana	nucleus	29.75	6.56

Protein Annotations

MapMan:15.5.52.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	EnsemblPlantsGene:GSMUA_Achr8G07650_001	EnsemblPlants:GSMUA_Achr8P07650_001	EnsemblPlants:GSMUA_Achr8T07650_001	InterPro:IPR014977	UniProt:M0TNG8
PFAM:PF08879	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF12	UniParc:UPI000296A215	InterPro:WRC_dom

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G07650_001]

Coordinates

chr8:+:5109409..5111508

Molecular Weight (calculated)

34881.7 Da

IEP (calculated)

7.651

GRAVY (calculated)

-0.607

Length

316 amino acids

Sequence
(BLAST)

001: MIAGVSVPLE LVLPIKTSLL GASPFSHRPQ LYHQLQPSWL QTGYWGRWVV DPEPGRCRRT DGKKWRCSRE VVVGQKYCER HVHRGRNRSR KHVEIPTPTS
101: TNGFKAALSS PAGLPRANHF DPSPSLPTLD ILPLDQSMRD CLETHHILLT ITSSLFKIFE CEDHIMDNQD FERSFQSDRS NFCLGDNKAE GYVLQKFFDE
201: WPKSQQEAND TVNYTSHPAS ATHLSISIPG NLSSDFSLKL STGNDAKKPR QASNNDGADG QLVCSSNNWS GWGHHGEASM GGPLAEALRS SASTHSPTSV
301: LHKPNGSVSE TSGISP

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.