Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g009820.2.1 | |
| Solyc11g006230.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | Solyc04g009820.2.1 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | Solyc11g006230.1.1 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083510.1.1 | Tomato | nucleus | 59.84 | 58.61 |
| KRH67865 | Soybean | nucleus | 52.76 | 52.34 |
| KRG96154 | Soybean | nucleus | 52.76 | 51.8 |
| KRH30830 | Soybean | nucleus | 44.09 | 50.15 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 54.33 | 50.0 |
| CDX79674 | Canola | nucleus | 46.72 | 48.37 |
| AT2G36400.1 | Thale cress | nucleus | 50.39 | 48.24 |
| KRH32671 | Soybean | nucleus | 42.52 | 48.21 |
| CDY43721 | Canola | nucleus | 44.62 | 47.89 |
| Bra023066.1-P | Field mustard | nucleus | 46.19 | 47.83 |
| CDX84560 | Canola | nucleus | 46.19 | 47.83 |
| CDX67545 | Canola | nucleus | 45.67 | 47.8 |
| CDX75039 | Canola | nucleus | 48.03 | 47.53 |
| Bra028541.1-P | Field mustard | nucleus | 45.41 | 47.27 |
| Bra017240.1-P | Field mustard | nucleus | 44.88 | 47.24 |
| Bra005268.1-P | Field mustard | nucleus | 47.77 | 46.91 |
| CDY13333 | Canola | nucleus | 44.62 | 46.45 |
| CDX84126 | Canola | nucleus | 47.77 | 46.43 |
| CDX78132 | Canola | nucleus | 45.41 | 45.89 |
| CDX73595 | Canola | nucleus | 45.41 | 45.41 |
| AT3G52910.1 | Thale cress | nucleus | 45.14 | 45.26 |
| Bra006956.1-P | Field mustard | nucleus | 44.62 | 44.5 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 35.96 | 43.35 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 42.52 | 41.33 |
| CDX76249 | Canola | nucleus | 41.47 | 38.63 |
| Solyc08g068760.1.1 | Tomato | cytosol | 12.86 | 31.61 |
| CDY66284 | Canola | nucleus | 41.99 | 29.74 |
| Bra019640.1-P | Field mustard | nucleus | 41.47 | 29.37 |
| Solyc08g079800.2.1 | Tomato | nucleus | 16.8 | 29.36 |
| Solyc07g041640.2.1 | Tomato | nucleus | 22.05 | 24.42 |
| Solyc08g005430.2.1 | Tomato | nucleus | 21.78 | 23.31 |
| Solyc12g096070.1.1 | Tomato | nucleus | 19.95 | 22.03 |
| Solyc08g075950.1.1 | Tomato | nucleus | 20.73 | 21.88 |
| Solyc01g091540.1.1 | Tomato | nucleus | 23.88 | 21.67 |
| Solyc04g077510.2.1 | Tomato | nucleus | 32.28 | 20.67 |
| Solyc02g092070.2.1 | Tomato | nucleus | 29.66 | 19.89 |
| Solyc03g082430.1.1 | Tomato | nucleus | 23.88 | 19.87 |
| Solyc08g083230.1.1 | Tomato | nucleus | 20.73 | 19.85 |
Protein Annotations
| MapMan:15.5.52.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | UniProt:K4CQU9 | PFAM:PF08879 | PFAM:PF08880 |
| PFscan:PS51666 | PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF12 | SMART:SM00951 | EnsemblPlantsGene:Solyc09g009200.1 |
| EnsemblPlants:Solyc09g009200.1.1 | UniParc:UPI000276C4CC | InterPro:WRC_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:-:2558721..2562818
Molecular Weight (calculated)
42039.2 Da
IEP (calculated)
9.263
GRAVY (calculated)
-0.695
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFKLKQWRN ESSSSEEKST KLPNLVLDLD SFSPSCYSHS DSDSNSSALP LFVSEPINKL SAFADSSLTP TKLPSMGNGY FSLAQWQELE LQALIYKHML
101: AGAPVPHELL YLIKKSLSNS SPYYNMSQQY HHYQQAMLHS GYWGRTNMDP EPGRCRRTDG KKWRCSRDVV SGHKYCERHV HRGRNRSRKP VEIPTTTTPR
201: GCNAATSSRG GSEVRKVNPA MTSHGGVTPQ FALSGHANSV DLLHLNQRPS KSIIEKKVPM EAQNDSKPSG QILRHFFDDW PRQQLEENEN ATSMASATSL
301: SISMPGNSSS DVSLKLSTGD RHNSGTGVHN VERSMWGSTQ VAPMGGPLAE ALRSSMSSSS PTSVLHHLPR GSTSEASYVT T
101: AGAPVPHELL YLIKKSLSNS SPYYNMSQQY HHYQQAMLHS GYWGRTNMDP EPGRCRRTDG KKWRCSRDVV SGHKYCERHV HRGRNRSRKP VEIPTTTTPR
201: GCNAATSSRG GSEVRKVNPA MTSHGGVTPQ FALSGHANSV DLLHLNQRPS KSIIEKKVPM EAQNDSKPSG QILRHFFDDW PRQQLEENEN ATSMASATSL
301: SISMPGNSSS DVSLKLSTGD RHNSGTGVHN VERSMWGSTQ VAPMGGPLAE ALRSSMSSSS PTSVLHHLPR GSTSEASYVT T
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.