Factsheet for GSMUA_Achr3P15140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr8P20680_001
GSMUA_Achr9P10760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04970_001	Banana	nucleus	69.47	58.35
GSMUA_Achr4P32310_001	Banana	nucleus	15.78	53.1
GSMUA_Achr7P27480_001	Banana	nucleus	65.78	52.88
Zm00001d007465_P001	Maize	nucleus	31.35	49.04
GSMUA_AchrUn_...	Banana	nucleus	32.99	47.21
CDY55116	Canola	nucleus	25.82	44.68
Os12t0484900-01	Rice	nucleus, plastid	37.7	44.55
Os03t0729500-01	Rice	nucleus	41.6	44.52
KXG28671	Sorghum	nucleus	33.81	44.47
HORVU4Hr1G037480.5	Barley	nucleus	28.89	42.99
GSMUA_Achr1P27000_001	Banana	nucleus	37.09	42.69
CDX83200	Canola	nucleus	33.4	41.37
CDY66422	Canola	nucleus	26.23	40.89
Zm00001d033876_P004	Maize	nucleus	48.77	40.13
EER90936	Sorghum	nucleus	48.98	39.77
HORVU4Hr1G010080.2	Barley	nucleus	48.16	38.59
TraesCS4D01G059600.1	Wheat	nucleus	45.49	38.41
TraesCS4B01G060000.1	Wheat	nucleus	47.95	38.3
TraesCS4A01G255000.1	Wheat	nucleus	47.54	38.22
CDX72654	Canola	nucleus	34.02	37.56
Zm00001d013346_P001	Maize	nucleus	44.47	37.09
Bra017851.1-P	Field mustard	nucleus	33.81	36.91
Bra000575.1-P	Field mustard	nucleus	39.14	36.87
GSMUA_Achr5P20170_001	Banana	extracellular	12.91	36.84
Bra011781.1-P	Field mustard	nucleus	34.02	36.81
AT2G22840.1	Thale cress	nucleus	39.75	36.6
CDX75672	Canola	nucleus	33.81	36.59
CDY29584	Canola	nucleus	30.33	36.27
CDX69322	Canola	nucleus	33.81	35.79
AT4G37740.1	Thale cress	nucleus	36.07	32.9
GSMUA_Achr8P12060_001	Banana	extracellular	13.52	32.67
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	13.32	31.71
GSMUA_Achr3P22790_001	Banana	nucleus	21.52	26.79
GSMUA_Achr8P07650_001	Banana	extracellular	17.21	26.58
GSMUA_Achr8P30640_001	Banana	nucleus	17.21	26.25
GSMUA_Achr8P26530_001	Banana	nucleus	77.05	26.22
GSMUA_Achr6P01270_001	Banana	nucleus	17.83	25.89
GSMUA_Achr10P...	Banana	nucleus	17.42	25.22
CDY21475	Canola	nucleus	25.2	24.75
GSMUA_Achr7P02330_001	Banana	nucleus	17.42	24.71
GSMUA_Achr1P23840_001	Banana	nucleus	17.83	24.23
GSMUA_Achr1P21940_001	Banana	nucleus	18.24	23.48
GSMUA_AchrUn_...	Banana	nucleus	17.62	20.92
GSMUA_Achr2P04650_001	Banana	extracellular	18.24	20.65

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr3G15140_001	EnsemblPlants:GSMUA_Achr3P15140_001	EnsemblPlants:GSMUA_Achr3T15140_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0SET0	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI000296497B	InterPro:WRC_dom	SEG:seg	:

Description

growth regulating factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G15140_001]

Coordinates

chr3:-:15620515..15624192

Molecular Weight (calculated)

52707.7 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.457

Length

488 amino acids

Sequence
(BLAST)

001: MDFGEVVSMD GLVGASSSEG GNLFSSSLTS QDTQVSRQRG FFGSIFHKHD RPAEPEDCDW RSLKMARTEA LVAAPTKTPH FLRSDSHHLF PDGEHMLSFS
101: STSKQSDMAV SGDATLPYHI RPSAPSPTGC LFSATSHASM QGVLARVRGP FTPSQWLELE HQALIYKYLV VNVPIPATLL VPIRRSLNAS GFPSLSSGSF
201: DSVGWGQFHV GFSGNADPEP GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKHVE GHTGHAAKAM PAIASSQSAS AVPDGTLSAS LTISQHENKK
301: LQSNITDPHP VQLNGHLIEE TQSDRTQLSI SIPMSCSDFS SSSSSNHDKL ALSPLKLSRE HDPIPMGLGV GLLNEVCHRQ ASWRPISWEA SMAGPLGEVL
401: TSTNSSTPKD QSKNCSSSLN LLCDNWDSSR QLESSPTGVL QKASFGSLSS SNGSSPRVEN LKIHESTGKL CNELLGSAVV NTPTIPSL

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.