Factsheet for Os03t0729500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0733600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Os03t0733600-01	AT5G28640.1	15326298
AT4G37740.1	Os03t0733600-01	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033876_P004	Maize	nucleus	80.7	62.06
EER90936	Sorghum	nucleus	81.36	61.73
TraesCS4D01G059600.1	Wheat	nucleus	78.07	61.59
HORVU4Hr1G010080.2	Barley	nucleus	80.26	60.1
TraesCS4A01G255000.1	Wheat	nucleus	79.61	59.8
TraesCS4B01G060000.1	Wheat	nucleus	79.82	59.57
Zm00001d013346_P001	Maize	nucleus	75.66	58.97
GSMUA_Achr1P27000_001	Banana	nucleus	43.86	47.17
CDY55116	Canola	nucleus	28.73	46.45
Os12t0484900-01	Rice	nucleus, plastid	39.69	43.83
CDX83200	Canola	nucleus	36.4	42.13
CDY66422	Canola	nucleus	28.73	41.85
GSMUA_Achr3P15140_001	Banana	nucleus	44.52	41.6
GSMUA_Achr8P04970_001	Banana	nucleus	51.1	40.1
GSMUA_Achr7P27480_001	Banana	nucleus	52.85	39.7
VIT_18s0001g08650.t01	Wine grape	nucleus	50.66	38.24
KRG88739	Soybean	nucleus	44.3	34.01
KRH05542	Soybean	nucleus	44.74	34.0
KRH05543	Soybean	nucleus	44.74	33.5
KRG88736	Soybean	nucleus	43.42	33.06
Solyc04g077510.2.1	Tomato	nucleus	42.98	32.94
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	42.98	32.83
CDX72654	Canola	nucleus	31.8	32.81
Bra017851.1-P	Field mustard	nucleus	31.58	32.21
CDY29584	Canola	nucleus	28.73	32.11
AT2G22840.1	Thale cress	nucleus	37.28	32.08
Bra000575.1-P	Field mustard	nucleus	36.4	32.05
CDX75672	Canola	nucleus	31.36	31.71
Bra011781.1-P	Field mustard	nucleus	31.14	31.49
CDX69322	Canola	nucleus	31.8	31.45
Os02t0678800-01	Rice	nucleus	14.47	31.28
GSMUA_AchrUn_...	Banana	nucleus	23.25	31.09
Os06t0204800-00	Rice	nucleus	20.18	30.56
AT4G37740.1	Thale cress	nucleus	34.87	29.72
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	14.91	28.81
Os04t0600900-02	Rice	plastid	22.59	26.82
Os11t0551900-01	Rice	nucleus	8.99	26.28
Os02t0701300-01	Rice	nucleus, plastid	21.93	25.38
Os03t0674700-01	Rice	nucleus	23.46	25.12
Os02t0776900-01	Rice	mitochondrion, nucleus	20.61	23.68
Os07t0467500-01	Rice	nucleus	12.72	21.56
CDY21475	Canola	nucleus	23.25	21.33
GSMUA_Achr8P26530_001	Banana	nucleus	53.95	17.15

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A0P0W366	ProteinID:BAS86204.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlantsGene:Os03g0729500
EnsemblPlants:Os03t0729500-01	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF40	SMART:SM00951	UniParc:UPI000042AEEB	InterPro:WRC_dom	SEG:seg	:

Description

GROWTH-REGULATING FACTOR 6Transcription factor, Floral organ development (Os03t0729500-01)

Coordinates

chr3:+:29823449..29825816

Molecular Weight (calculated)

49364.5 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.534

Length

456 amino acids

Sequence
(BLAST)

001: MQGAMARVRG PFTPSQWIEL EHQALIYKYL AANSPVPHSL LIPIRRSLTS PYSPAYFGSS TLGWGSFQLG YSGSADPEPG RCRRTDGKKW RCSRDAVADQ
101: KYCERHMNRG RHRSRKHVEG QPGHAAKAMP AAVAAAAASA TQPSAPAAHS GGAVAGLAIN HQHQQMKNYA ANTANPCSLQ YSRDLANKHN ESEQVQDSDS
201: LSMLTSISTR NTGSLFPFSK QHNPFEVSNS RPDFGLVSPD SLMSSPHSSL ENVNLLTSQS LNEQQSSVSL QHFVDWPRTP AQGALAWPDA EDMQAQRSQL
301: SISAPMASSD LSSASTSPIH EKLMLSPLKL SREYSPIGLG FAANRDEVNQ GEANWMPMFR DSLMGGPLGE VLTKNNNMEA RNCLSESLNL LNDGWDSSSG
401: FDSSPVGVLQ KTTFGSVSSS TGSSPRLENH SVYDGNSNLR DDLGSVVVNH PSIRLV

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.