Factsheet for Os02t0701300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017742_P001	Maize	plastid	74.87	72.3
Os04t0600900-02	Rice	plastid	69.8	71.61
OQU85555	Sorghum	plastid	70.81	63.84
Os06t0204800-00	Rice	nucleus	28.17	36.88
Os02t0678800-01	Rice	nucleus	18.53	34.6
Os02t0776900-01	Rice	mitochondrion, nucleus	31.98	31.74
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	18.78	31.36
Os07t0467500-01	Rice	nucleus	16.5	24.16
Os03t0729500-01	Rice	nucleus	25.38	21.93
Os03t0674700-01	Rice	nucleus	22.59	20.89
Os12t0484900-01	Rice	nucleus, plastid	21.57	20.58
Os11t0551900-01	Rice	nucleus	7.61	19.23

Protein Annotations

MapMan:15.5.52.1	EntrezGene:4330436	EMBL:AJ566408	EMBL:AK063983	EMBL:AP014958	ProteinID:BAD07524.1
ProteinID:BAF09757.1	ProteinID:DAA05208.1	ProteinID:EEE57634.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlantsGene:Os02g0701300
EnsemblPlants:Os02t0701300-01	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF21	UniProt:Q6ZIK5	SMART:SM00951	UniParc:UPI000023670A	InterPro:WRC_dom	RefSeq:XP_015624297.1
SEG:seg	:	:	:	:	:

Description

GRAIN SIZE 2Growth-regulating factor, Regulation of grain shape and panicle length, Negative regulation of seed shattering (Os02t0701300-01)

Coordinates

chr2:-:28863274..28866997

Molecular Weight (calculated)

41837.8 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.448

Length

394 amino acids

Sequence
(BLAST)

001: MAMPYASLSP AVADHRSSPA AATASLLPFC RSTPLSAGGG GVAMGEDAPM TARWPPAAAA RLPPFTAAQY EELEQQALIY KYLVAGVPVP PDLVLPIRRG
101: LDSLAARFYN HPALGYGPYF GKKLDPEPGR CRRTDGKKWR CSKEAAPDSK YCERHMHRGR NRSRKPVETQ LVAQSQPPSS VVGSAAAPLA AASNGSSFQN
201: HSLYPAIAGS NGGGGGRNMP SSFGSALGSQ LHMDNAAPYA AVGGGTGKDL RYTAYGTRSL ADEQSQLITE AINTSIENPW RLLPSQNSPF PLSSYSQLGA
301: LSDLGQNTPS SLSKVQRQPL SFFGNDYAAV DSVKQENQTL RPFFDEWPKG RDSWSDLADE NANLSSFSGT QLSISIPMAS SDFSAASSRS TNGD

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.