Factsheet for Zm00001d017742_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85555	Sorghum	plastid	80.64	75.29
Os02t0701300-01	Rice	nucleus, plastid	72.3	74.87
Os04t0600900-02	Rice	plastid	60.78	64.58
Zm00001d002429_P003	Maize	nucleus	52.7	59.89
Zm00001d005387_P001	Maize	nucleus	9.07	59.68
TraesCS2B01G458400.1	Wheat	nucleus, plastid	54.66	57.62
Zm00001d026240_P006	Maize	plastid	55.88	57.43
TraesCS2D01G435200.1	Wheat	nucleus, plastid	54.9	57.29
TraesCS2A01G435100.1	Wheat	nucleus	53.68	57.03
Zm00001d042010_P001	Maize	nucleus	9.31	55.07
Zm00001d014421_P001	Maize	cytosol	10.29	42.86
Zm00001d045533_P001	Maize	nucleus	34.8	38.8
Zm00001d035965_P004	Maize	nucleus	35.05	37.53
Zm00001d018260_P001	Maize	mitochondrion	29.9	32.45
Zm00001d051456_P001	Maize	nucleus	17.4	32.13
Zm00001d000238_P001	Maize	nucleus	29.41	30.61
Zm00001d052112_P001	Maize	mitochondrion, nucleus	29.9	30.42
Zm00001d037117_P001	Maize	mitochondrion, nucleus	26.72	29.62
Zm00001d006338_P002	Maize	mitochondrion	17.89	26.26
Zm00001d007465_P001	Maize	nucleus	18.87	24.68
Zm00001d006348_P001	Maize	nucleus	14.71	21.98
Zm00001d021362_P001	Maize	extracellular, nucleus	14.46	21.93
Zm00001d033396_P003	Maize	nucleus	21.08	19.63
Zm00001d013555_P001	Maize	nucleus	20.59	19.27
Zm00001d013346_P001	Maize	nucleus	27.45	19.15
Zm00001d033876_P004	Maize	nucleus	27.21	18.72
Zm00001d002049_P001	Maize	cytosol, plastid	3.43	14.29

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A060D764	ProteinID:AQK73911.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EMBL:KJ727972
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF21
SMART:SM00951	UniParc:UPI0002215460	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d017742	EnsemblPlants:Zm00001d017742_P001	EnsemblPlants:Zm00001d017742_T001
SEG:seg	:	:	:	:	:

Description

GRF-transcription factor 6Growth-regulating factor 6

Coordinates

chr5:-:205734245..205737674

Molecular Weight (calculated)

42657.6 Da

IEP (calculated)

7.603

GRAVY (calculated)

-0.425

Length

408 amino acids

Sequence
(BLAST)

001: MAMPYASLSP AGAADHRSST ATASLVPFCR STPLSAGGGL GEEDAQASAR WPAARPVVPF TPAQYQELEQ QALIYKYLVA GVPVPPDLVV PIRRGLDSLA
101: TRFYGQPTLG YGPYLGRKLD PEPGRCRRTD GKKWRCSKEA APDSKYCERH MHRGRNRSRK PVETQLAPQS QPPAAAAVSA APPLAAAAAA TTNGSGFQNH
201: SLYPAIAGST GGGGGVGGSG NISSPFSSSM GGSSQLHMDS AASYSYAALG GGTAKDLRYN AYGIRSLADE HNQLIAEAID SSIESQWRLP SSSFPLSSYP
301: HLGALGDLGG QNSTVSSLPK MEKQQPPSSF LGNDTGAGMA MGSASAKQEG QTLRHFFDEW PKARDSWPGL SDETASLASF PPATQLSMSI PMASSDFSVA
401: SSQSPNDD

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.