CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017742_P001	Maize	plastid	75.29	80.64
Os02t0701300-01	Rice	nucleus, plastid	63.84	70.81
Os04t0600900-02	Rice	plastid	56.29	64.06
EES12787	Sorghum	nucleus	51.95	60.05
TraesCS2A01G435100.1	Wheat	nucleus	51.72	58.85
TraesCS2B01G458400.1	Wheat	nucleus, plastid	51.95	58.66
TraesCS2D01G435200.1	Wheat	nucleus, plastid	51.49	57.54
EER89089	Sorghum	cytosol, mitochondrion, nucleus	29.52	40.44
OQU76020	Sorghum	mitochondrion, nucleus	24.03	31.07
KXG31209	Sorghum	mitochondrion, nucleus	27.0	29.8
KXG28671	Sorghum	nucleus	19.22	22.64
EER99361	Sorghum	nucleus	13.96	22.51
EER90936	Sorghum	nucleus	25.86	18.8
EER93679	Sorghum	nucleus	18.31	18.39

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1Z5RQ29	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlants:OQU85555
ProteinID:OQU85555	ProteinID:OQU85555.1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF21	SMART:SM00951	EnsemblPlantsGene:SORBI_3004G269900	unigene:Sbi.18810	UniParc:UPI000B8B9D28
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:61417220..61421827

Molecular Weight (calculated)

47291.5 Da

IEP (calculated)

9.976

GRAVY (calculated)

-0.544

Length

437 amino acids

Sequence
(BLAST)

001: MPLFPRQAPT TAPPRPRRRR SSPSAAPPRS PRKYSTTSTR RRRFARGSPI VAVWFAVVTR WYVCWCRGGG GGLGEDAQLS SRWPAARPVV PFTPAQYEEL
101: EQQALIYKYL VAGVPVPPDL VVPIRRGLDS LATRFYGHPT LGGYGTYYLG KKLDPEPGRC RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVETQL
201: VPQSQPPATA AAVSAAPPLA LAAATTTTNG SCFQNHSLYP AIAGSTGGGG GASNISTPFS SSMGSSQLHM DNAASYAALG GGTAKDLRYN AYGIRSLAEE
301: HNQLIAEAID SSMENQWRLP PSQTSSFPLS SYPQLGALSN LGQSTVTSLS KMERQQPLSF LGNSEFGAME SAAKQQENQT LRPFFDEWPK ARDSWPGLSD
401: DNAASLAPSF PATQLSMSIP MASSDFSVAS SQSPNDD

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.