CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	EER90925	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037117_P001	Maize	mitochondrion, nucleus	80.47	73.91
Zm00001d000238_P001	Maize	nucleus	84.62	72.96
Os06t0204800-00	Rice	nucleus	56.51	63.46
TraesCS7A01G165600.1	Wheat	nucleus	54.44	59.55
HORVU7Hr1G034610.4	Barley	mitochondrion	55.03	59.42
TraesCS7B01G070200.1	Wheat	nucleus	54.73	58.54
TraesCS7D01G166400.1	Wheat	nucleus	54.73	57.81
KXG31209	Sorghum	mitochondrion, nucleus	46.75	39.9
GSMUA_Achr8P30640_001	Banana	nucleus	32.84	34.69
VIT_09s0002g01350.t01	Wine grape	nucleus	34.91	32.51
VIT_11s0016g01250.t01	Wine grape	nucleus	36.39	31.78
KRH47599	Soybean	nucleus	31.95	31.3
GSMUA_Achr7P02330_001	Banana	nucleus	31.66	31.1
KRH12524	Soybean	nucleus	33.14	30.68
KRH37478	Soybean	nucleus	32.84	30.41
Solyc07g041640.2.1	Tomato	nucleus	30.77	30.23
EER89089	Sorghum	cytosol, mitochondrion, nucleus	28.4	30.09
KRH19281	Soybean	nucleus	33.73	29.69
KRH06183	Soybean	nucleus	31.36	29.44
KRH02627	Soybean	nucleus	32.84	29.44
EES12787	Sorghum	nucleus	32.25	28.84
GSMUA_Achr1P21940_001	Banana	nucleus	32.25	28.76
Bra001532.1-P	Field mustard	nucleus	29.59	27.55
CDX71979	Canola	nucleus	31.07	27.27
CDX82503	Canola	nucleus	29.29	27.05
PGSC0003DMT400033847	Potato	nucleus	21.3	26.67
CDX75742	Canola	nucleus	28.7	26.58
CDY39081	Canola	nucleus	31.07	26.38
AT3G13960.1	Thale cress	nucleus	30.77	26.2
Bra027384.1-P	Field mustard	nucleus	28.99	25.06
CDX97531	Canola	nucleus	28.7	25.0
CDY55209	Canola	nucleus	28.4	24.62
OQU85555	Sorghum	plastid	31.07	24.03
Bra021521.1-P	Field mustard	cytosol	26.04	21.41
KXG28671	Sorghum	nucleus	22.19	20.22
EER99361	Sorghum	nucleus	15.09	18.82
EER93679	Sorghum	nucleus	23.08	17.93
EER90936	Sorghum	nucleus	28.11	15.81

Protein Annotations

MapMan:15.5.52.1	EntrezGene:8070748	ProteinID:AAL68844.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlants:OQU76020
ProteinID:OQU76020	ProteinID:OQU76020.1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF10	UniProt:Q8W0U7	SMART:SM00951	EnsemblPlantsGene:SORBI_3010G077200	UniParc:UPI00000A29CB
InterPro:WRC_dom	RefSeq:XP_002436657.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:6374926..6376491

Molecular Weight (calculated)

35946.1 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.564

Length

338 amino acids

Sequence
(BLAST)

001: MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP PQPSPSLAYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR
101: CSREAHGESK YCEKHIHRGK SRSRKPVEVT SPAAAAYRPS ALSISPPRAA DAPPPSLAHP HQHLRHGAAS AAAAARGAPG QATAGALQLH LDASLHAASP
201: PPSYHRYAHS HAHYTPPPSL FPGGGGGYDY GQSKELREAE LRRRHFHALG ADLSLDKPLA ATAAGSAAAE KPLRRFFDEW PRESGDTRPS SWAGAEDATQ
301: LSISIPAASP SDLAASAAAR YHNGEPSGER KTPLLLVP

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.