Factsheet for HORVU7Hr1G034610.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G010610.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	HORVU4Hr1G010610.1	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G165600.1	Wheat	nucleus	90.73	91.91
TraesCS7B01G070200.1	Wheat	nucleus	89.78	88.92
TraesCS7D01G166400.1	Wheat	nucleus	90.42	88.44
Os06t0204800-00	Rice	nucleus	56.87	59.14
OQU76020	Sorghum	mitochondrion, nucleus	59.42	55.03
Zm00001d037117_P001	Maize	mitochondrion, nucleus	54.63	46.47
Zm00001d000238_P001	Maize	nucleus	57.51	45.92
HORVU6Hr1G081210.1	Barley	nucleus	51.12	38.74
GSMUA_Achr8P30640_001	Banana	nucleus	32.91	32.19
VIT_09s0002g01350.t01	Wine grape	nucleus	34.5	29.75
KRH12524	Soybean	nucleus	33.87	29.04
KRH02627	Soybean	nucleus	34.82	28.91
KRH37478	Soybean	nucleus	33.55	28.77
KRH19281	Soybean	nucleus	35.14	28.65
Solyc07g041640.2.1	Tomato	nucleus	31.31	28.49
KRH47599	Soybean	nucleus	29.71	26.96
VIT_11s0016g01250.t01	Wine grape	nucleus	32.91	26.61
GSMUA_Achr7P02330_001	Banana	nucleus	29.07	26.45
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	18.85	26.34
PGSC0003DMT400033847	Potato	nucleus	22.68	26.3
HORVU6Hr1G065740.4	Barley	nucleus	17.57	25.82
Bra001532.1-P	Field mustard	nucleus	29.71	25.62
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	32.59	25.56
CDX82503	Canola	nucleus	29.71	25.41
GSMUA_Achr1P21940_001	Banana	nucleus	30.67	25.33
KRH06183	Soybean	nucleus	29.07	25.28
CDX75742	Canola	nucleus	29.39	25.21
HORVU6Hr1G068370.1	Barley	nucleus	31.31	25.13
AT3G13960.1	Thale cress	nucleus	31.63	24.94
CDX71979	Canola	nucleus	30.67	24.94
CDX97531	Canola	nucleus	30.03	24.23
CDY39081	Canola	nucleus	30.67	24.12
CDY55209	Canola	nucleus	30.03	24.1
HORVU2Hr1G094470.2	Barley	nucleus	18.85	23.32
Bra027384.1-P	Field mustard	nucleus	29.07	23.27
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	15.65	23.11
HORVU0Hr1G016610.1	Barley	plastid	30.67	23.02
HORVU4Hr1G037480.5	Barley	nucleus	20.45	19.51
Bra021521.1-P	Field mustard	cytosol	24.92	18.98
HORVU4Hr1G003440.12	Barley	nucleus	23.64	18.14
HORVU2Hr1G054270.3	Barley	plastid	16.29	17.0
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	6.07	16.67
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	16.61	16.56
HORVU4Hr1G010080.2	Barley	nucleus	29.39	15.11

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	EnsemblPlantsGene:HORVU7Hr1G034610	EnsemblPlants:HORVU7Hr1G034610.4	InterPro:IPR014977	InterPro:IPR014978	UniProt:M0XXY0
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF10
SMART:SM00951	UniParc:UPI0002966E17	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr7H:+:72772516..72773588

Molecular Weight (calculated)

34659.3 Da

IEP (calculated)

9.378

GRAVY (calculated)

-0.886

Length

313 amino acids

Sequence
(BLAST)

001: MMLGGQGGGG RCLFTASQWR ELEHQALIYK YMAAGSQVPH ELVVPLRHRD AAFASIDTAP SLACFPPPQP SLGWGLYGTG AQYARKPEDP EPGRCRRTDG
101: KKWRCSREAY GESKYCDRHM HRGKNRSRKP VEPMSSSSSS VSSPAASYRQ TTLSMSPPTP ADAPSYGHGH GQDHLRAAAA QSQINPLQLH LDTRSPPPSY
201: HRYAPAQQYG GSYFTGRQQE AEAEARRRQH FLALGADLSL DKPDATAAAS STTEDKPLRR FFDEWPRDGN AVEGRPWNMG HRDETQLSMS IPTTTASHPD
301: LAAYRRRNGT YYA

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.