Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55209 | Canola | nucleus | 85.39 | 86.92 |
| Bra027384.1-P | Field mustard | nucleus | 85.39 | 86.7 |
| CDX97531 | Canola | nucleus | 84.63 | 86.6 |
| CDX71979 | Canola | nucleus | 81.61 | 84.16 |
| CDY39081 | Canola | nucleus | 82.37 | 82.16 |
| Bra001532.1-P | Field mustard | nucleus | 75.06 | 82.09 |
| CDX82503 | Canola | nucleus | 74.81 | 81.15 |
| CDX75742 | Canola | nucleus | 74.31 | 80.82 |
| Bra021521.1-P | Field mustard | cytosol | 73.8 | 71.29 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 38.79 | 42.42 |
| KRH47599 | Soybean | nucleus | 36.52 | 42.03 |
| KRH06183 | Soybean | nucleus | 36.02 | 39.72 |
| Os06t0204800-00 | Rice | nucleus | 25.94 | 34.22 |
| Zm00001d018260_P001 | Maize | mitochondrion | 31.74 | 33.51 |
| Os02t0776900-01 | Rice | mitochondrion, nucleus | 32.49 | 32.49 |
| TraesCS6A01G335900.1 | Wheat | nucleus | 33.25 | 32.27 |
| TraesCS6B01G366700.1 | Wheat | nucleus | 33.25 | 32.2 |
| TraesCS6D01G315700.1 | Wheat | nucleus | 33.5 | 32.13 |
| HORVU6Hr1G081210.1 | Barley | nucleus | 33.25 | 31.96 |
| PGSC0003DMT400033847 | Potato | nucleus | 21.66 | 31.85 |
| AT2G06200.2 | Thale cress | endoplasmic reticulum, plasma membrane | 22.67 | 31.8 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 24.94 | 31.63 |
| KXG31209 | Sorghum | mitochondrion, nucleus | 31.23 | 31.31 |
| OQU76020 | Sorghum | mitochondrion, nucleus | 26.2 | 30.77 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 23.93 | 30.74 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 24.18 | 30.38 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 24.43 | 30.31 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 30.23 | 29.93 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 26.45 | 28.53 |
| Zm00001d000238_P001 | Maize | nucleus | 26.2 | 26.53 |
| AT5G53660.1 | Thale cress | nucleus | 19.14 | 20.82 |
| AT2G36400.1 | Thale cress | nucleus | 19.4 | 19.35 |
| AT3G52910.1 | Thale cress | nucleus | 17.88 | 18.68 |
| AT2G45480.3 | Thale cress | nucleus | 18.39 | 16.94 |
| AT2G22840.1 | Thale cress | nucleus | 21.91 | 16.42 |
| AT4G37740.1 | Thale cress | nucleus | 20.65 | 15.33 |
| AT4G24150.1 | Thale cress | nucleus | 16.62 | 13.39 |
Protein Annotations
| MapMan:15.5.52.1 | EntrezGene:820609 | UniProt:A0A178VGS1 | EMBL:AB493612 | ProteinID:AEE75445.1 | ArrayExpress:AT3G13960 |
| EnsemblPlantsGene:AT3G13960 | RefSeq:AT3G13960 | TAIR:AT3G13960 | RefSeq:AT3G13960-TAIR-G | EnsemblPlants:AT3G13960.1 | TAIR:AT3G13960.1 |
| EMBL:AY102638 | Symbol:AtGRF5 | ProteinID:BAB02326.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | GO:GO:0048366 | InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | RefSeq:NP_188012.2 | ProteinID:OAP04525.1 | PFAM:PF08879 | PFAM:PF08880 |
| PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020144 | PO:PO:0025022 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF38 | UniProt:Q8L8A6 | SMART:SM00951 | UniParc:UPI00000A8C09 |
| InterPro:WRC_dom | SEG:seg | : | : | : | : |
Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
Coordinates
chr3:+:4608076..4610497
Molecular Weight (calculated)
44697.9 Da
IEP (calculated)
8.202
GRAVY (calculated)
-1.047
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.