Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d033905_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | Zm00001d033905_P001 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76020 | Sorghum | mitochondrion, nucleus | 72.96 | 84.62 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 65.31 | 69.57 |
| Os06t0204800-00 | Rice | nucleus | 46.94 | 61.13 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 45.66 | 57.93 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 45.92 | 57.51 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 45.92 | 56.96 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 45.92 | 56.25 |
| Zm00001d005387_P001 | Maize | nucleus | 8.16 | 51.61 |
| Zm00001d042010_P001 | Maize | nucleus | 8.16 | 46.38 |
| Zm00001d018260_P001 | Maize | mitochondrion | 37.76 | 39.36 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 39.03 | 38.15 |
| Zm00001d014421_P001 | Maize | cytosol | 9.44 | 37.76 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 28.57 | 35.0 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 30.1 | 32.51 |
| Zm00001d002429_P003 | Maize | nucleus | 29.34 | 32.03 |
| VIT_11s0016g01250.t01 | Wine grape | nucleus | 31.38 | 31.78 |
| KRH12524 | Soybean | nucleus | 29.59 | 31.78 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 27.81 | 31.69 |
| KRH37478 | Soybean | nucleus | 29.34 | 31.51 |
| KRH47599 | Soybean | nucleus | 27.3 | 31.01 |
| Zm00001d045533_P001 | Maize | nucleus | 28.83 | 30.87 |
| Solyc07g041640.2.1 | Tomato | nucleus | 26.53 | 30.23 |
| Zm00001d026240_P006 | Maize | plastid | 30.1 | 29.72 |
| KRH02627 | Soybean | nucleus | 28.57 | 29.71 |
| KRH19281 | Soybean | nucleus | 29.08 | 29.69 |
| Zm00001d017742_P001 | Maize | plastid | 30.61 | 29.41 |
| Zm00001d035965_P004 | Maize | nucleus | 28.57 | 29.4 |
| KRH06183 | Soybean | nucleus | 26.79 | 29.17 |
| Zm00001d051456_P001 | Maize | nucleus | 16.33 | 28.96 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 27.81 | 28.76 |
| Bra001532.1-P | Field mustard | nucleus | 25.77 | 27.82 |
| CDX71979 | Canola | nucleus | 27.04 | 27.53 |
| CDX82503 | Canola | nucleus | 25.51 | 27.32 |
| PGSC0003DMT400033847 | Potato | nucleus | 18.37 | 26.67 |
| CDY39081 | Canola | nucleus | 27.04 | 26.63 |
| CDX75742 | Canola | nucleus | 24.74 | 26.58 |
| AT3G13960.1 | Thale cress | nucleus | 26.53 | 26.2 |
| Bra027384.1-P | Field mustard | nucleus | 25.26 | 25.32 |
| CDX97531 | Canola | nucleus | 25.0 | 25.26 |
| CDY55209 | Canola | nucleus | 24.74 | 24.87 |
| Zm00001d007465_P001 | Maize | nucleus | 18.62 | 23.4 |
| Zm00001d006338_P002 | Maize | mitochondrion | 15.56 | 21.94 |
| Bra021521.1-P | Field mustard | cytosol | 22.19 | 21.17 |
| Zm00001d006348_P001 | Maize | nucleus | 14.54 | 20.88 |
| Zm00001d021362_P001 | Maize | extracellular, nucleus | 14.03 | 20.45 |
| Zm00001d013555_P001 | Maize | nucleus | 21.17 | 19.04 |
| Zm00001d033396_P003 | Maize | nucleus | 20.41 | 18.26 |
| Zm00001d033876_P004 | Maize | nucleus | 26.53 | 17.54 |
| Zm00001d013346_P001 | Maize | nucleus | 25.0 | 16.75 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 3.32 | 13.27 |
Protein Annotations
| MapMan:15.5.52.1 | UniProt:A0A1X7YH51 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 |
| InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 |
| PFscan:PS51666 | PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF10 | SMART:SM00951 | UniParc:UPI0008453B16 |
| InterPro:WRC_dom | EnsemblPlantsGene:Zm00001d000238 | EnsemblPlants:Zm00001d000238_P001 | EnsemblPlants:Zm00001d000238_T001 | SEG:seg | : |
Description
GRF-transcription factor 12Growth-regulating factor 6
Coordinates
chrB73V4_ctg49:+:34019..35965
Molecular Weight (calculated)
42045.0 Da
IEP (calculated)
7.688
GRAVY (calculated)
-0.550
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDTGAICMI ADDDTSTSSR SRAASDTSTN LETTTSIGVP SISTSLATEA RALGAVVLCL SSFFVVEQSG LEEEMMLSGH GGGRRLFTAS QWQELEHQAL
101: IFKYMASGAP VPHDLVLPLR LATGVDTAPS LAFPPQPSPS LAYWGCYGAG APFGRKAEDP EPGRCRRTDG KKWRCSREAH GDSKYCEKHI HRGKSRSRKP
201: VEVTSPAAYR PSAFSISPPR AADAPPPPPG LGHPQQQHLR HGALSPAGRA HAAGALQLHL DSSLHAASPP PSYHRYAHSH AHYTPPPPPS LYDYGQSKEL
301: REAAELRRRH FHALGADLSL DKPLADAGAA EKPLRRFFDE WPRERGDTRP SWAGAEDATQ LSISIPAASP SSDHAASAAA RCHNDGSDRC IS
101: IFKYMASGAP VPHDLVLPLR LATGVDTAPS LAFPPQPSPS LAYWGCYGAG APFGRKAEDP EPGRCRRTDG KKWRCSREAH GDSKYCEKHI HRGKSRSRKP
201: VEVTSPAAYR PSAFSISPPR AADAPPPPPG LGHPQQQHLR HGALSPAGRA HAAGALQLHL DSSLHAASPP PSYHRYAHSH AHYTPPPPPS LYDYGQSKEL
301: REAAELRRRH FHALGADLSL DKPLADAGAA EKPLRRFFDE WPRERGDTRP SWAGAEDATQ LSISIPAASP SSDHAASAAA RCHNDGSDRC IS
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Arabidopsis Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.