Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | CDX86202 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY00027 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY05600 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY33883 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY57020 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97531 | Canola | nucleus | 97.18 | 97.68 |
| Bra027384.1-P | Field mustard | nucleus | 97.18 | 96.93 |
| AT3G13960.1 | Thale cress | nucleus | 86.92 | 85.39 |
| CDX82503 | Canola | nucleus | 78.97 | 84.15 |
| CDX71979 | Canola | nucleus | 82.05 | 83.12 |
| CDX75742 | Canola | nucleus | 77.69 | 83.01 |
| CDY39081 | Canola | nucleus | 82.05 | 80.4 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 38.72 | 41.6 |
| KRH47599 | Soybean | nucleus | 36.41 | 41.16 |
| KRH06183 | Soybean | nucleus | 36.15 | 39.17 |
| Zm00001d018260_P001 | Maize | mitochondrion | 31.54 | 32.71 |
| Os02t0776900-01 | Rice | mitochondrion, nucleus | 33.08 | 32.49 |
| TraesCS6A01G335900.1 | Wheat | nucleus | 33.85 | 32.27 |
| TraesCS6B01G366700.1 | Wheat | nucleus | 33.85 | 32.2 |
| HORVU6Hr1G081210.1 | Barley | nucleus | 33.85 | 31.96 |
| Os06t0204800-00 | Rice | nucleus | 24.62 | 31.89 |
| TraesCS6D01G315700.1 | Wheat | nucleus | 33.85 | 31.88 |
| PGSC0003DMT400033847 | Potato | nucleus | 21.79 | 31.48 |
| KXG31209 | Sorghum | mitochondrion, nucleus | 31.28 | 30.81 |
| CDY70432 | Canola | nucleus | 18.72 | 30.04 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 24.1 | 30.03 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 23.08 | 29.13 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 23.59 | 29.11 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 29.74 | 28.93 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 23.59 | 28.75 |
| OQU76020 | Sorghum | mitochondrion, nucleus | 24.62 | 28.4 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 25.38 | 26.9 |
| CDY55116 | Canola | nucleus | 18.46 | 25.53 |
| Zm00001d000238_P001 | Maize | nucleus | 24.87 | 24.74 |
| CDY66422 | Canola | nucleus | 18.97 | 23.64 |
| CDY51791 | Canola | nucleus | 18.46 | 22.02 |
| CDX84126 | Canola | nucleus | 21.28 | 21.17 |
| CDY28823 | Canola | nucleus | 18.72 | 21.04 |
| CDY33407 | Canola | nucleus | 21.54 | 21.0 |
| CDX75039 | Canola | nucleus | 20.51 | 20.78 |
| CDX78132 | Canola | nucleus | 20.0 | 20.69 |
| CDX84560 | Canola | nucleus | 19.49 | 20.65 |
| CDX83200 | Canola | nucleus | 20.77 | 20.56 |
| CDY13333 | Canola | nucleus | 19.23 | 20.49 |
| CDX73595 | Canola | nucleus | 20.0 | 20.47 |
| CDX67545 | Canola | nucleus | 18.97 | 20.33 |
| CDX79674 | Canola | nucleus | 18.97 | 20.11 |
| CDY43721 | Canola | nucleus | 17.44 | 19.15 |
| CDY29584 | Canola | nucleus | 19.49 | 18.63 |
| CDX76249 | Canola | nucleus | 19.49 | 18.58 |
| CDX72654 | Canola | nucleus | 19.74 | 17.42 |
| CDY37044 | Canola | nucleus | 18.97 | 16.93 |
| CDY27382 | Canola | nucleus | 18.97 | 16.67 |
| CDY21475 | Canola | nucleus | 21.03 | 16.5 |
| CDX75672 | Canola | nucleus | 18.97 | 16.41 |
| CDY72447 | Canola | nucleus, plastid | 14.36 | 16.28 |
| CDX69322 | Canola | nucleus | 19.23 | 16.27 |
| CDY03485 | Canola | nucleus | 14.36 | 16.09 |
| CDY10989 | Canola | nucleus | 15.38 | 15.96 |
| CDX92617 | Canola | nucleus | 15.38 | 14.74 |
| CDY66284 | Canola | nucleus | 19.49 | 14.13 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078IUU9 | UniProt:A0A078IUU9 | EnsemblPlants:CDY55209 | ProteinID:CDY55209 | ProteinID:CDY55209.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00016511001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF38 | SMART:SM00951 | UniParc:UPI0004EE2ACE | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng28460DBnaCnng28460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUU9]
Coordinates
chrLK033383:+:30027..32044
Molecular Weight (calculated)
44079.4 Da
IEP (calculated)
8.262
GRAVY (calculated)
-1.039
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSLSGNGGR TIERPPFTPT QWQELENQAL IYKYMVSGVP VPPELIFSIR RSLDSSLVSR LLPHQSIGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSIDQNQTTA PLTSPSLSFP NNNNPSPTLS SSSSTYSAAS SSPSIDAYSN INRLGVGSSN SRGYFNNHSL DYPYPLSSPK
201: QQQQQTLHHA SALSLHQNTS TDSQFNALAS ATDHKDFRYF QGIGERAGVG AGERTFFPEA SRSFQDSPYH HQRPLATVMN DPYHSGTDHK VDHHHHTYSS
301: VSSSSQHDQD HHRQQQQQCF VMGADMFNKP TRTVFANTSR QDHQEEEEKD SSETKKSLHH FFGEDWAQNK NNSDSWLDLS SHSRLDTGNL
101: AYPDSKYCEK HMHRGRNRAR KSIDQNQTTA PLTSPSLSFP NNNNPSPTLS SSSSTYSAAS SSPSIDAYSN INRLGVGSSN SRGYFNNHSL DYPYPLSSPK
201: QQQQQTLHHA SALSLHQNTS TDSQFNALAS ATDHKDFRYF QGIGERAGVG AGERTFFPEA SRSFQDSPYH HQRPLATVMN DPYHSGTDHK VDHHHHTYSS
301: VSSSSQHDQD HHRQQQQQCF VMGADMFNKP TRTVFANTSR QDHQEEEEKD SSETKKSLHH FFGEDWAQNK NNSDSWLDLS SHSRLDTGNL
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Arabidopsis Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.