Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015184.1-P | Field mustard | nucleus | 99.75 | 99.75 |
| CDY70432 | Canola | nucleus | 51.25 | 84.36 |
| AT2G06200.2 | Thale cress | endoplasmic reticulum, plasma membrane | 51.0 | 72.08 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 22.0 | 27.5 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 21.5 | 25.0 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 23.25 | 24.54 |
| CDY55116 | Canola | nucleus | 16.25 | 23.05 |
| CDX82503 | Canola | nucleus | 20.75 | 22.68 |
| CDX75742 | Canola | nucleus | 20.5 | 22.47 |
| CDX71979 | Canola | nucleus | 21.25 | 22.08 |
| CDY51791 | Canola | nucleus | 17.75 | 21.71 |
| CDX97531 | Canola | nucleus | 21.0 | 21.65 |
| CDY55209 | Canola | nucleus | 21.0 | 21.54 |
| CDY66422 | Canola | nucleus | 16.75 | 21.41 |
| CDY39081 | Canola | nucleus | 21.25 | 21.36 |
| CDY28823 | Canola | nucleus | 18.0 | 20.75 |
| CDX75039 | Canola | nucleus | 19.25 | 20.0 |
| CDX84126 | Canola | nucleus | 19.5 | 19.9 |
| CDX84560 | Canola | nucleus | 18.0 | 19.57 |
| CDX79674 | Canola | nucleus | 17.75 | 19.29 |
| CDY43721 | Canola | nucleus | 17.0 | 19.15 |
| CDY13333 | Canola | nucleus | 17.5 | 19.13 |
| CDY29584 | Canola | nucleus | 19.5 | 19.12 |
| CDX67545 | Canola | nucleus | 17.25 | 18.96 |
| CDX75672 | Canola | nucleus | 19.75 | 17.52 |
| CDX78132 | Canola | nucleus | 16.25 | 17.24 |
| CDX72654 | Canola | nucleus | 19.0 | 17.19 |
| CDY72447 | Canola | nucleus, plastid | 14.75 | 17.15 |
| CDX76249 | Canola | nucleus | 17.5 | 17.11 |
| CDX73595 | Canola | nucleus | 16.25 | 17.06 |
| CDY03485 | Canola | nucleus | 14.75 | 16.95 |
| CDX69322 | Canola | nucleus | 19.5 | 16.92 |
| CDX83200 | Canola | nucleus | 16.0 | 16.24 |
| CDY10989 | Canola | nucleus | 15.25 | 16.22 |
| CDX92617 | Canola | nucleus | 16.0 | 15.72 |
| CDY21475 | Canola | nucleus | 18.5 | 14.89 |
| CDY27382 | Canola | nucleus | 15.0 | 13.51 |
| CDY37044 | Canola | nucleus | 14.75 | 13.5 |
| CDY66284 | Canola | nucleus | 17.0 | 12.64 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078H7L4 | UniProt:A0A078H7L4 | EnsemblPlants:CDY33407 | ProteinID:CDY33407 | ProteinID:CDY33407.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00054294001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | SMART:SM00951 | UniParc:UPI0004EEFA05 | InterPro:WRC_dom | SEG:seg |
Description
BnaA07g04320DBnaA07g04320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7L4]
Coordinates
chrLK032313:+:354757..357665
Molecular Weight (calculated)
45822.5 Da
IEP (calculated)
8.970
GRAVY (calculated)
-0.591
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNQRNIWWL RVSNIAHADV KKIICDEAIQ VEVPIIRCGP TTRNGAKVIR EGFFKAVQEI LDQDKETGQN QLLIEEMVQL NIQDQAGPIE VQDQADPIQF
101: RSLSQNRTGL IISQAIPVQT QLQSSPVLLS DPSVRNKTSF IISFLYLFMT TRIHFTESQW EELENQALVF KYIAANIPVP PHLLFLIRRP FLFSSSAYSS
201: SPNFFSPHFG WNVYEMGKER KIDAEPGRCR RTDGKKWRCS KDASPDSKYC ERHMHRGKNR SSRKPLPPPP QFYVPSTPSI FLDFSLSSSR EKSKRTGYMN
301: DFFSIEPSGS IKSCSGLAME GDGGSSKYES LKQREKQTDR SCFIVGTELG TLERPLMLVA KQKQRDDKDY EEEEQRSKRF YKFLDEWPSS KSSGSTSLFI
101: RSLSQNRTGL IISQAIPVQT QLQSSPVLLS DPSVRNKTSF IISFLYLFMT TRIHFTESQW EELENQALVF KYIAANIPVP PHLLFLIRRP FLFSSSAYSS
201: SPNFFSPHFG WNVYEMGKER KIDAEPGRCR RTDGKKWRCS KDASPDSKYC ERHMHRGKNR SSRKPLPPPP QFYVPSTPSI FLDFSLSSSR EKSKRTGYMN
301: DFFSIEPSGS IKSCSGLAME GDGGSSKYES LKQREKQTDR SCFIVGTELG TLERPLMLVA KQKQRDDKDY EEEEQRSKRF YKFLDEWPSS KSSGSTSLFI
001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
Arabidopsis Description
AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.