Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022667.1-P | Field mustard | nucleus | 96.02 | 90.49 |
| CDY28823 | Canola | nucleus | 95.72 | 90.2 |
| AT5G53660.1 | Thale cress | nucleus | 78.9 | 70.68 |
| Solyc08g068760.1.1 | Tomato | cytosol | 16.21 | 34.19 |
| CDY55116 | Canola | nucleus | 23.55 | 27.3 |
| CDX79674 | Canola | nucleus | 29.36 | 26.09 |
| CDX84560 | Canola | nucleus | 29.36 | 26.09 |
| CDX75039 | Canola | nucleus | 30.28 | 25.71 |
| CDY66422 | Canola | nucleus | 24.46 | 25.56 |
| CDY70432 | Canola | nucleus | 18.96 | 25.51 |
| CDX84126 | Canola | nucleus | 30.58 | 25.51 |
| CDY13333 | Canola | nucleus | 27.83 | 24.86 |
| CDX67545 | Canola | nucleus | 27.52 | 24.73 |
| CDY43721 | Canola | nucleus | 26.3 | 24.23 |
| CDX73595 | Canola | nucleus | 28.13 | 24.15 |
| CDX78132 | Canola | nucleus | 27.52 | 23.87 |
| CDX83200 | Canola | nucleus | 25.99 | 21.57 |
| CDX76249 | Canola | nucleus | 26.91 | 21.52 |
| PGSC0003DMT400008352 | Potato | nucleus | 29.36 | 21.38 |
| CDY10989 | Canola | nucleus | 24.46 | 21.28 |
| CDX75672 | Canola | nucleus | 28.75 | 20.84 |
| CDX69322 | Canola | nucleus | 29.36 | 20.82 |
| Solyc03g082430.1.1 | Tomato | nucleus | 29.05 | 20.74 |
| CDY03485 | Canola | nucleus | 21.71 | 20.4 |
| CDX92617 | Canola | nucleus | 25.08 | 20.15 |
| CDY29584 | Canola | nucleus | 25.08 | 20.1 |
| CDX71979 | Canola | nucleus | 22.94 | 19.48 |
| CDY72447 | Canola | nucleus, plastid | 20.49 | 19.48 |
| CDX72654 | Canola | nucleus | 26.3 | 19.46 |
| CDX82503 | Canola | nucleus | 21.41 | 19.13 |
| CDX75742 | Canola | nucleus | 21.1 | 18.9 |
| CDY39081 | Canola | nucleus | 22.94 | 18.84 |
| CDX97531 | Canola | nucleus | 22.02 | 18.56 |
| CDY55209 | Canola | nucleus | 22.02 | 18.46 |
| KRH64328 | Soybean | nucleus | 33.03 | 18.21 |
| KRH53600 | Soybean | nucleus | 32.11 | 18.17 |
| CDY33407 | Canola | nucleus | 21.71 | 17.75 |
| VIT_16s0098g01080.t01 | Wine grape | nucleus | 28.75 | 16.32 |
| CDY66284 | Canola | nucleus | 26.61 | 16.17 |
| CDY37044 | Canola | nucleus | 19.27 | 14.42 |
| CDY27382 | Canola | nucleus | 19.57 | 14.41 |
| CDY21475 | Canola | nucleus | 21.71 | 14.29 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078IPA6 | UniProt:A0A078IPA6 | EnsemblPlants:CDY51791 | ProteinID:CDY51791 | ProteinID:CDY51791.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00004236001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF41 | SMART:SM00951 | UniParc:UPI0004EE9D49 | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g44780DBnaC02g44780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPA6]
Coordinates
chrLK033027:-:62475..63771
Molecular Weight (calculated)
35916.3 Da
IEP (calculated)
8.205
GRAVY (calculated)
-0.586
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFLKVSDKT TTLYRNNSLF GLNQQQMEIH PHPHVITPHA GNGVMGCYYY YPFTNAQLKE LERQAMIYKY MIASIPVPFD LLVSSSYAPP CNNKNAVGDL
101: EPGRCRRTDG KKWRCSKEVV SNHKYCERHL HRGRPRSRKH VELPYSRPSN IGGGSEKNRI LSSIKDTTVV EPKEVSSALS NYRGLEIFPA SASNEQENKY
201: LNFIDVWSDG VRSSEKLSTP ASSSPNGNPS LYSLDLSMGG NSLMGHDEMG LRVIGPGRDD PHGYGPYGAV VSSSLDEMSR WLAPTSATPG GPLAEILRPN
301: PSSAFSGEME ANSLTATPTP SSSPLST
101: EPGRCRRTDG KKWRCSKEVV SNHKYCERHL HRGRPRSRKH VELPYSRPSN IGGGSEKNRI LSSIKDTTVV EPKEVSSALS NYRGLEIFPA SASNEQENKY
201: LNFIDVWSDG VRSSEKLSTP ASSSPNGNPS LYSLDLSMGG NSLMGHDEMG LRVIGPGRDD PHGYGPYGAV VSSSLDEMSR WLAPTSATPG GPLAEILRPN
301: PSSAFSGEME ANSLTATPTP SSSPLST
001: MDFLKVSDKT TIPYRSDSLF SLNQQQYKES SFGFRDMEIH PHPTPYAGNG LLGCYYYYPF TNAQLKELER QAMIYKYMIA SIPVPFDLLV SSPSSASPCN
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV
Arabidopsis Description
GRF7Growth-regulating factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.