CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64328	Soybean	nucleus	87.72	85.5
Solyc08g068760.1.1	Tomato	cytosol	12.11	45.16
AT5G53660.1	Thale cress	nucleus	20.59	32.6
PGSC0003DMT400008352	Potato	nucleus	25.09	32.29
CDY51791	Canola	nucleus	18.17	32.11
Bra022667.1-P	Field mustard	nucleus	19.2	31.99
CDY28823	Canola	nucleus	19.2	31.99
KRH32671	Soybean	nucleus	18.34	31.55
Solyc03g082430.1.1	Tomato	nucleus	24.91	31.44
KRH30830	Soybean	nucleus	17.99	31.04
KRH67865	Soybean	nucleus	20.24	30.47
KRG96154	Soybean	nucleus	20.24	30.15
KRH23984	Soybean	nucleus	16.78	29.13
KRH29333	Soybean	nucleus	16.61	28.15
KRH77798	Soybean	nucleus	15.22	27.67
KRH27682	Soybean	nucleus	14.53	27.27
KRH12524	Soybean	nucleus	17.13	27.12
KRH37478	Soybean	nucleus	17.13	27.12
KRH02627	Soybean	nucleus	17.3	26.53
KRH19281	Soybean	nucleus	17.47	26.3
KRH47599	Soybean	nucleus	15.4	25.8
VIT_16s0098g01080.t01	Wine grape	nucleus	25.26	25.35
KRH05542	Soybean	nucleus	26.3	25.33
KRH06183	Soybean	nucleus	15.57	25.0
KRG88739	Soybean	nucleus	25.61	24.92
KRH05543	Soybean	nucleus	25.78	24.47
KRG88736	Soybean	nucleus	24.91	24.04
KRH76368	Soybean	nucleus	13.32	22.99
KRH39656	Soybean	nucleus, plastid	13.32	22.85
KRH65240	Soybean	nucleus	14.71	18.16
KRH76298	Soybean	nucleus	14.01	17.69

Protein Annotations

EntrezGene:100796948	MapMan:15.5.52.1	EMBL:ACUP02003478	EnsemblPlantsGene:GLYMA_06G134600	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	UniProt:I1KAZ6	InterPro:IPR014977
InterPro:IPR014978	EnsemblPlants:KRH53600	ProteinID:KRH53600	ProteinID:KRH53600.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF41	SMART:SM00951	UniParc:UPI0002339E63
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:11067265..11070671

Molecular Weight (calculated)

62129.3 Da

IEP (calculated)

8.841

GRAVY (calculated)

-0.581

Length

578 amino acids

Sequence
(BLAST)

001: MGELFGVGKR RNISSSNNNN NSSSSSVLGL DVKVQQSPEA LFHNRMMMMA HHNHHHRPLS SPFDNNGDGD GPTTYMSFTN HINLVSGASS VLGPAIDAGC
101: GAAPPAPVRT LQPFDISSYT SSPTTTTTTF NFKPPSAGVM AASLGFPFTS AQWRELERQA MIYKYMMASV PVPHDLLTPS SRSSCMDGGF NLRLANSTDP
201: EPGRCRRTDG KKWRCSRDVA PNHKYCERHM HRGRPRSRKP VEVNTNSTTT PTSVNNNNHQ IKKARHECNN NPFATPDVTA AISNPTSRKN GSSPHFLGST
301: TTQPYLDSSL SLDNFGLKAA SFDSVASVSA NKEPRGLEWM LNGDPISLGA SDSQWQSLMH NKDGMTSVSS CNTTESQYLN SLALYNSGLE QQNRRHPLFL
401: NPLVVPMENL QPEKPRGFID AWSNAESNAN TNTTNKNSAA SIGKLSLSSL DLSMGGAAVN EDVGNVNMGL GLMEPNGKTH TGTKISLSNW QNPAPWVASS
501: LGGPLAEVLR SSTVTATTTT NEATSNTPSP ATTTHAESPS GVLQKTLVSL SDSSNNSSPR VASSRANSEM ALLRFQSN

Best Arabidopsis Sequence Match ( AT5G53660.1 )
(BLAST)

001: MDFLKVSDKT TIPYRSDSLF SLNQQQYKES SFGFRDMEIH PHPTPYAGNG LLGCYYYYPF TNAQLKELER QAMIYKYMIA SIPVPFDLLV SSPSSASPCN
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV

Arabidopsis Description

GRF7Growth-regulating factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.