Factsheet for VIT_16s0098g01080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g02680.t01	Wine grape	nucleus	13.54	43.58
VIT_02s0025g04910.t01	Wine grape	nucleus	12.67	34.93
Solyc08g068760.1.1	Tomato	cytosol	9.2	34.19
CDY51791	Canola	nucleus	16.32	28.75
VIT_16s0039g01450.t01	Wine grape	nucleus	15.8	28.62
Bra022667.1-P	Field mustard	nucleus	17.01	28.24
CDY28823	Canola	nucleus	17.01	28.24
VIT_00s0494g00010.t01	Wine grape	nucleus	27.95	26.97
AT5G53660.1	Thale cress	nucleus	17.01	26.85
VIT_18s0001g08650.t01	Wine grape	nucleus	27.95	26.66
KRH53600	Soybean	nucleus	25.35	25.26
PGSC0003DMT400008352	Potato	nucleus	19.62	25.17
KRH64328	Soybean	nucleus	25.69	24.96
Solyc03g082430.1.1	Tomato	nucleus	19.44	24.45
VIT_08s0007g03760.t01	Wine grape	nucleus	16.32	22.71
VIT_09s0002g01350.t01	Wine grape	nucleus	13.02	20.66
VIT_11s0016g01250.t01	Wine grape	nucleus	13.37	19.9
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	10.94	15.67

Protein Annotations

EntrezGene:100250422	wikigene:100250422	MapMan:15.5.52.1	ProteinID:CCB48084	ProteinID:CCB48084.1	UniProt:F6H761
EMBL:FN595247	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100250422	wikigene:LOC100250422	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF41	SMART:SM00951
TIGR:TC69051	UniParc:UPI0001984F9E	ArrayExpress:VIT_16s0098g01080	EnsemblPlantsGene:VIT_16s0098g01080	EnsemblPlants:VIT_16s0098g01080.t01	unigene:Vvi.17516
InterPro:WRC_dom	RefSeq:XP_002271355	RefSeq:XP_002271355.2	RefSeq:XP_002271355.3	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:21346622..21349185

Molecular Weight (calculated)

60424.7 Da

IEP (calculated)

7.947

GRAVY (calculated)

-0.439

Length

576 amino acids

Sequence
(BLAST)

001: MSGSGGGGLG LTLQQRGTES FLFPCSRMMM MVRHNHDRAF EGGGGGGGGG GDGHGPTGSG GAEEVVRCMS DIYDVAGGSG SGGAVGVRTS LQPFDISSAT
101: TTTPSHTSFK SPGAGAGAGG MAASLGFPFT SAQWKELERQ AMIYKYIMAS VPVPPELLMP ITRNFSESAA SPHSTLGRGS IFNLRFSNGA DPEPGRCRRT
201: DGKKWRCSRD VALNQKYCER HMHRGRPRSR KPVEVHADVN SSHKKTRHCH ALPATPATLS SPMLTNTSCS QSQYLGSALD PRHQSPVFLY KSDSKASPFT
301: PLVSVPSFKE TRSLEWMAKG EAAPMATSDQ QWQQLMQTKI GLTIESSSSI CNSNASVFNQ QYQEEPINLN SYTDFSAGAD NPGRDSINMF LNPGVISLQK
401: PQTETPRAFI DAWSSAVTEN PANTCNKSSV SSNGKLPLSS LTLSMGGDNG IENEMGRTEM GLRIVDSGGG GCEKPQLSTW LTPASWAGLA PGGPLAEVLR
501: PSSVAAASNP ASPHGGNGDS ISLSETAASS PSGVLQKPVV SPSDSSGNSS PTLTASPAKP EITFPWLNQS KVASAE

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.