Factsheet for VIT_16s0039g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27682	Soybean	nucleus	68.55	70.78
KRH23984	Soybean	nucleus	72.96	69.67
KRH77798	Soybean	nucleus	68.55	68.55
KRH29333	Soybean	nucleus	72.33	67.45
GSMUA_Achr10P...	Banana	nucleus	62.89	59.35
PGSC0003DMT400079338	Potato	nucleus	55.97	55.97
GSMUA_Achr1P23840_001	Banana	nucleus	62.58	55.43
Solyc12g096070.1.1	Tomato	nucleus	57.86	53.33
PGSC0003DMT400075563	Potato	nucleus	58.18	52.86
PGSC0003DMT400047580	Potato	nucleus	58.49	52.69
Solyc08g075950.1.1	Tomato	nucleus	59.12	52.08
Solyc08g005430.2.1	Tomato	nucleus	58.18	51.97
GSMUA_AchrUn_...	Banana	nucleus	62.89	48.66
GSMUA_Achr2P04650_001	Banana	extracellular	64.78	47.8
VIT_02s0025g04910.t01	Wine grape	nucleus	25.47	38.76
VIT_11s0016g01250.t01	Wine grape	nucleus	46.23	37.98
VIT_09s0002g01350.t01	Wine grape	nucleus	42.14	36.91
VIT_02s0025g02680.t01	Wine grape	nucleus	20.75	36.87
VIT_08s0007g03760.t01	Wine grape	nucleus	28.62	21.98
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	27.04	21.39
VIT_18s0001g08650.t01	Wine grape	nucleus	40.25	21.19
VIT_00s0494g00010.t01	Wine grape	nucleus	38.68	20.6
VIT_16s0098g01080.t01	Wine grape	nucleus	28.62	15.8

Protein Annotations

EntrezGene:100259737	wikigene:100259737	MapMan:15.5.52.1	ProteinID:CCB50575	ProteinID:CCB50575.1	UniProt:F6HEC9
EMBL:FN595750	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100259737	wikigene:LOC100259737	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF8	SMART:SM00951
TIGR:TC58105	TIGR:TC64938	UniParc:UPI0002108D78	ArrayExpress:VIT_16s0039g01450	EnsemblPlantsGene:VIT_16s0039g01450	EnsemblPlants:VIT_16s0039g01450.t01
unigene:Vvi.5492	InterPro:WRC_dom	RefSeq:XP_002270427	RefSeq:XP_002270427.2	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:975988..979958

Molecular Weight (calculated)

35559.3 Da

IEP (calculated)

8.018

GRAVY (calculated)

-0.797

Length

318 amino acids

Sequence
(BLAST)

001: MATGMMVRSS PFTVSQWQEL EHQALIFKYL MAGLPVPPDL VLPIQKSFES MSSRFFHHPT MGYCSFYGKK VDPEPGRCRR TDGKKWRCSK DAYPDSKYCE
101: RHMHRGRNRS RKPVESQTTT QSSSTVTSLT VTGGSGSGAG TFQNLPLQNF NNPQGGPGSG TNQSQFHMEP IPYGIPNKDY RYLHGLKPEV GEHSFFSEAS
201: GSNRGLQMDS PLDSTWPLMP SRVSSFPPSK SSENSILQSD YPQHSFFSSE FASGEVVKQE GQSLRPFFDE WPKTRDSWSG LEEERSNQTS FSTTQLSISI
301: PMASSDFSTT SSRSPHDN

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.