CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039334.1-P	Field mustard	nucleus	97.25	99.77
CDY27382	Canola	nucleus	95.65	94.14
AT2G45480.3	Thale cress	nucleus	71.4	72.39
CDY55116	Canola	nucleus	15.33	23.76
TraesCS2B01G256600.2	Wheat	nucleus	13.27	22.05
CDX84560	Canola	nucleus	18.54	22.01
CDX79674	Canola	nucleus	18.54	22.01
TraesCS2D01G246600.1	Wheat	nucleus	13.27	21.97
CDX75039	Canola	nucleus	18.99	21.56
CDY66422	Canola	nucleus	15.33	21.41
CDY70432	Canola	nucleus	11.9	21.4
CDY13333	Canola	nucleus	17.85	21.31
Os07t0467500-01	Rice	nucleus	13.04	21.19
CDX84126	Canola	nucleus	18.99	21.17
CDX67545	Canola	nucleus	17.62	21.15
EER99361	Sorghum	nucleus	13.04	21.03
Zm00001d021362_P001	Maize	extracellular, nucleus	12.81	20.82
CDX82503	Canola	nucleus	17.39	20.77
Zm00001d006348_P001	Maize	nucleus	12.81	20.51
CDX75742	Canola	nucleus	16.93	20.27
CDX78132	Canola	nucleus	17.16	19.89
CDY43721	Canola	nucleus	16.02	19.72
CDX73595	Canola	nucleus	17.16	19.68
CDY39081	Canola	nucleus	17.85	19.6
CDY51791	Canola	nucleus	14.42	19.27
CDY28823	Canola	nucleus	15.1	19.02
CDY55209	Canola	nucleus	16.93	18.97
CDX71979	Canola	nucleus	16.7	18.96
CDX97531	Canola	nucleus	16.7	18.81
CDX83200	Canola	nucleus	16.93	18.78
HORVU2Hr1G054270.3	Barley	plastid	12.81	18.67
TraesCS2A01G238700.1	Wheat	nucleus	13.27	18.18
CDY29584	Canola	nucleus	16.02	17.16
CDX76249	Canola	nucleus	16.02	17.11
CDY03485	Canola	nucleus	13.5	16.95
CDY72447	Canola	nucleus, plastid	12.81	16.28
CDY10989	Canola	nucleus	13.96	16.22
CDX72654	Canola	nucleus	16.25	16.06
CDX92617	Canola	nucleus	13.96	14.99
CDX75672	Canola	nucleus	15.33	14.86
CDY33407	Canola	nucleus	13.5	14.75
CDX69322	Canola	nucleus	15.33	14.53
CDY21475	Canola	nucleus	16.25	14.29
CDY66284	Canola	nucleus	16.25	13.2
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.52.1	GO:A0A078HI77	UniProt:A0A078HI77	EnsemblPlants:CDY37044	ProteinID:CDY37044	ProteinID:CDY37044.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	EnsemblPlantsGene:GSBRNA2T00063253001
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951	UniParc:UPI0004EDF3CC	InterPro:WRC_dom
SEG:seg	:	:	:	:	:

Description

BnaA04g26220DBnaA04g26220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI77]

Coordinates

chrLK032390:+:196602..198473

Molecular Weight (calculated)

49128.7 Da

IEP (calculated)

9.625

GRAVY (calculated)

-0.824

Length

437 amino acids

Sequence
(BLAST)

001: MEEKKHSLQS NKMQSPKTEE EDEWRRKKWP CMKAAQLQEF RMQALVYRYI EAGVRVPNHL VVPIWNSLAL SSSSSSGYLI HHNYPSSSNA VLNDKVDPEP
101: TRCRRTDGKK WRCSNKVLLF QKYCERHMHR GRKRSRKLVE SSSSYDVASS FASTKRDNTD GLNSSTESHS VSHGAMSVSS NAQVVTIASL PSARVCDNIP
201: RPSLVVTEST NKSVRRRITD MSYDDFIKQR GATTCVRGFP VQGSERLPSV QKFFPEASDN TSEAARISSN RKNEIIARSR EWKNMNVNCG GLFPGIHFSP
301: DTVLQDRGGF GLHRVETDSE PGRCRRTDGK KWRCSKDVLS GQKYCDRHMH RGSIKKKHPV ETTHTHENTV KTAARSVTCQ DGDGQKLPVS VLGREQLSRV
401: SDEKNTNSCS TDTTITDIAL KGEEDNEEVL SLCSSGV

Best Arabidopsis Sequence Match ( AT2G45480.3 )
(BLAST)

001: MKMQSPKMEQ EEVEEERMRN KWPWMKAAQL MEFRMQALVY RYIEAGLRVP HHLVVPIWNS LALSSSSNYN YHSSSLLSNK GVTHIDTLET EPTRCRRTDG
101: KKWRCSNTVL LFEKYCERHM HRGRKRSRKL VESSSEVASS STKYDNTYGL DRYNESQSHL HGTISGSSNA QVVTIASLPS ARSCENVIRP SLVISEFTNK
201: SVSHGRKNME MSYDDFINEK EASMCVGVVP LQGDESKPSV QKFFPEVSDK CLEAAKFSSN RKNDIIARSR EWKNMNVNGG LFHGIHFSPD TVLQERGCFR
301: LQGVETDNEP GRCRRTDGKK WRCSKDVLSG QKYCDKHMHR GMKKKHPVDT TNSHENAGFS PLTVETAVRS VVPCKDGDDQ KHSVSVMGIT LPRVSDEKST
401: SSCSTDTTIT DTALRGEDDD EEYLSLFSPG V

Arabidopsis Description

GRF9Growth-regulating factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.