Factsheet for TraesCS2A01G238700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G256600.2	Wheat	nucleus	80.88	98.1
TraesCS2D01G246600.1	Wheat	nucleus	80.56	97.35
Os07t0467500-01	Rice	nucleus	64.89	76.95
HORVU2Hr1G054270.3	Barley	plastid	71.47	76.0
EER99361	Sorghum	nucleus	63.01	74.17
Zm00001d021362_P001	Maize	extracellular, nucleus	61.44	72.86
Zm00001d006348_P001	Maize	nucleus	61.44	71.79
TraesCS6A01G257600.1	Wheat	nucleus	21.32	32.08
TraesCS2A01G398300.2	Wheat	nucleus	21.0	29.78
TraesCS7A01G165600.1	Wheat	nucleus	16.3	16.83
TraesCS2A01G435100.1	Wheat	nucleus	18.81	15.62
TraesCS7A01G049100.1	Wheat	nucleus	17.87	15.41
TraesCS4A01G434900.1	Wheat	nucleus	17.87	15.36
TraesCS6A01G174800.1	Wheat	cytosol, mitochondrion, nucleus	15.05	15.24
TraesCS6A01G269600.1	Wheat	nucleus	19.12	14.95
TraesCS6A01G335900.1	Wheat	nucleus	17.55	13.69
CDY37044	Canola	nucleus	18.18	13.27
Bra039334.1-P	Field mustard	nucleus	17.55	13.15
CDY27382	Canola	nucleus	18.18	13.06
TraesCS4A01G291500.1	Wheat	nucleus	16.61	12.99
AT2G45480.3	Thale cress	nucleus	16.3	12.06
TraesCS4A01G255000.1	Wheat	nucleus	18.18	9.56

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF14	SMART:SM00951	EnsemblPlantsGene:TraesCS2A01G238700	EnsemblPlants:TraesCS2A01G238700.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:323528096..323530760

Molecular Weight (calculated)

34685.6 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.492

Length

319 amino acids

Sequence
(BLAST)

001: MAAEGEDKKD ANSVGGGGGG GENTLEAAEE AILQAVGQEP GQELEGEVEE SADREGNGDD AGKEDSGCKD LVLVEDPVLV EDPEEGFRYK SDVGFFKHGK
101: SDLFIVMLAF LNTDDAQNIR FWVYHCFAVI VVFMYKAELS VATAALQEEM RALFASVPEG AGASFTAMQL QELEQQSRVY QYMAARVPVP THLVFPIWKS
201: VTGASSEGAQ NYPTLMGLAT LCLDFGKSPE PEPGRCRRTD GKKWRCWRKT IPNEKYCERH MHRGRKRPVQ VIVEDDEPDS ASGSKSSSGK VTEGGKKTDD
301: KSSSSKKLAV AAPAAVEFT

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.