Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G250600.1 | |
| TraesCS4B01G064000.1 | |
| TraesCS4D01G062900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | TraesCS4A01G250600.1 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | TraesCS4B01G064000.1 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | TraesCS4D01G062900.1 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G070200.1 | Wheat | nucleus | 95.79 | 93.67 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 96.44 | 93.12 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 91.91 | 90.73 |
| Os06t0204800-00 | Rice | nucleus | 57.28 | 58.8 |
| OQU76020 | Sorghum | mitochondrion, nucleus | 59.55 | 54.44 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 55.66 | 46.74 |
| Zm00001d000238_P001 | Maize | nucleus | 57.93 | 45.66 |
| TraesCS6A01G335900.1 | Wheat | nucleus | 49.51 | 37.41 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 32.36 | 31.25 |
| TraesCS6A01G257600.1 | Wheat | nucleus | 20.39 | 29.72 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 33.66 | 28.65 |
| TraesCS4A01G434900.1 | Wheat | nucleus | 33.98 | 28.3 |
| TraesCS7A01G049100.1 | Wheat | nucleus | 33.66 | 28.11 |
| KRH12524 | Soybean | nucleus | 33.01 | 27.95 |
| KRH37478 | Soybean | nucleus | 32.69 | 27.67 |
| KRH02627 | Soybean | nucleus | 33.66 | 27.59 |
| KRH19281 | Soybean | nucleus | 33.98 | 27.34 |
| TraesCS2A01G398300.2 | Wheat | nucleus | 19.74 | 27.11 |
| Solyc07g041640.2.1 | Tomato | nucleus | 30.1 | 27.03 |
| TraesCS2A01G435100.1 | Wheat | nucleus | 33.33 | 26.82 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 29.77 | 26.74 |
| VIT_11s0016g01250.t01 | Wine grape | nucleus | 32.36 | 25.84 |
| KRH47599 | Soybean | nucleus | 28.8 | 25.8 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 31.07 | 25.33 |
| PGSC0003DMT400033847 | Potato | nucleus | 22.01 | 25.19 |
| Bra001532.1-P | Field mustard | nucleus | 29.13 | 24.79 |
| TraesCS6A01G269600.1 | Wheat | nucleus | 32.36 | 24.51 |
| CDX82503 | Canola | nucleus | 28.8 | 24.32 |
| KRH06183 | Soybean | nucleus | 28.16 | 24.17 |
| AT3G13960.1 | Thale cress | nucleus | 30.74 | 23.93 |
| CDX71979 | Canola | nucleus | 29.77 | 23.9 |
| CDX75742 | Canola | nucleus | 28.16 | 23.84 |
| CDX97531 | Canola | nucleus | 29.13 | 23.2 |
| CDY39081 | Canola | nucleus | 29.77 | 23.12 |
| CDY55209 | Canola | nucleus | 29.13 | 23.08 |
| Bra027384.1-P | Field mustard | nucleus | 28.16 | 22.25 |
| Bra021521.1-P | Field mustard | cytosol | 24.27 | 18.25 |
| TraesCS4A01G291500.1 | Wheat | nucleus | 22.98 | 17.4 |
| TraesCS2A01G238700.1 | Wheat | nucleus | 16.83 | 16.3 |
| TraesCS6A01G174800.1 | Wheat | cytosol, mitochondrion, nucleus | 16.18 | 15.87 |
| TraesCS4A01G255000.1 | Wheat | nucleus | 28.48 | 14.5 |
Protein Annotations
| MapMan:15.5.52.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF10 | SMART:SM00951 | EnsemblPlantsGene:TraesCS7A01G165600 | EnsemblPlants:TraesCS7A01G165600.1 |
| InterPro:WRC_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:121056253..121057416
Molecular Weight (calculated)
34215.9 Da
IEP (calculated)
8.465
GRAVY (calculated)
-0.841
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLGGHGGGG GRCLFTASQW RELEHQALIY KYMAAGSQVP HELVLPLRHR DAAAFAGIDT APSVACYPPP QPSLGWGLYG AGAQYARKPE DPEPGRCRRT
101: DGKKWRCSRE AYGESKYCDR HMHRGKNRSR KPVEPMSSSS VSSPAASYRQ TTLSMSPPTP ADTPSYGHGH LRAAASQSQI NPLQLHLDTP SPPPSYHRYA
201: PAQQYGGSFF PSRQQVQEEA EAEARRRQHF LALGADLSLD KPDATTAASS TTEEKPLRRF FDEWPRDGNA VEVRPWNMGH RDETLLSMSI PTTTASHPDL
301: AAYRHHNDE
101: DGKKWRCSRE AYGESKYCDR HMHRGKNRSR KPVEPMSSSS VSSPAASYRQ TTLSMSPPTP ADTPSYGHGH LRAAASQSQI NPLQLHLDTP SPPPSYHRYA
201: PAQQYGGSFF PSRQQVQEEA EAEARRRQHF LALGADLSLD KPDATTAASS TTEEKPLRRF FDEWPRDGNA VEVRPWNMGH RDETLLSMSI PTTTASHPDL
301: AAYRHHNDE
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Arabidopsis Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.