Factsheet for Bra027384.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010002.1-P
Bra020616.1-P
Bra036131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	Bra010002.1-P	AT5G28640.1	15960617
AT3G13960.1	Bra020616.1-P	AT5G28640.1	15960617
AT3G13960.1	Bra036131.1-P	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97531	Canola	nucleus	96.93	97.68
CDY55209	Canola	nucleus	96.93	97.18
AT3G13960.1	Thale cress	nucleus	86.7	85.39
Bra001532.1-P	Field mustard	nucleus	78.01	84.02
Bra021521.1-P	Field mustard	cytosol	74.94	71.29
VIT_09s0002g01350.t01	Wine grape	nucleus	38.11	41.05
KRH47599	Soybean	nucleus	35.81	40.58
KRH06183	Soybean	nucleus	35.55	38.61
Zm00001d018260_P001	Maize	mitochondrion	30.95	32.18
TraesCS6A01G335900.1	Wheat	nucleus	33.25	31.78
TraesCS6B01G366700.1	Wheat	nucleus	33.25	31.71
Os06t0204800-00	Rice	nucleus	24.3	31.56
Os02t0776900-01	Rice	mitochondrion, nucleus	31.97	31.49
HORVU6Hr1G081210.1	Barley	nucleus	33.25	31.48
TraesCS6D01G315700.1	Wheat	nucleus	33.25	31.4
PGSC0003DMT400033847	Potato	nucleus	21.48	31.11
KXG31209	Sorghum	mitochondrion, nucleus	30.43	30.05
HORVU7Hr1G034610.4	Barley	mitochondrion	23.27	29.07
OQU76020	Sorghum	mitochondrion, nucleus	25.06	28.99
Zm00001d052112_P001	Maize	mitochondrion, nucleus	29.16	28.43
TraesCS7B01G070200.1	Wheat	nucleus	22.76	28.16
TraesCS7A01G165600.1	Wheat	nucleus	22.25	28.16
TraesCS7D01G166400.1	Wheat	nucleus	22.76	27.81
Zm00001d037117_P001	Maize	mitochondrion, nucleus	25.32	26.9
Zm00001d000238_P001	Maize	nucleus	25.32	25.26
Bra022667.1-P	Field mustard	nucleus	18.93	21.33
Bra005268.1-P	Field mustard	nucleus	20.97	21.13
Bra015184.1-P	Field mustard	nucleus	21.48	21.0
Bra023066.1-P	Field mustard	nucleus	19.69	20.92
Bra028541.1-P	Field mustard	nucleus	18.67	19.95
Bra006956.1-P	Field mustard	nucleus	19.44	19.9
Bra017240.1-P	Field mustard	nucleus	17.65	19.06
Bra039334.1-P	Field mustard	nucleus	18.93	17.37
Bra017851.1-P	Field mustard	nucleus	19.18	16.78
Bra011781.1-P	Field mustard	nucleus	18.93	16.41
Bra000575.1-P	Field mustard	nucleus	21.23	16.02
Bra019244.1-P	Field mustard	nucleus	15.35	16.0
Bra013767.1-P	Field mustard	nucleus	14.32	15.09
Bra019640.1-P	Field mustard	nucleus	19.18	13.94

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra027384	EnsemblPlants:Bra027384.1	EnsemblPlants:Bra027384.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4EF22	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF38	SMART:SM00951	UniParc:UPI0002547EBF	InterPro:WRC_dom	SEG:seg	:

Description

AT3G13960 (E=4e-136) AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR 5); transcription activator

Coordinates

chrA05:-:20636810..20638358

Molecular Weight (calculated)

44084.4 Da

IEP (calculated)

8.269

GRAVY (calculated)

-1.019

Length

391 amino acids

Sequence
(BLAST)

001: MMSLSGNGGR TIERPPFTPT QWQELENQAL IYKYMVSGVP VPPELIFSIR RSLDSSLVSR LLPHQSIGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AHPDSKYCEK HMHRGRNRAR KSIDQNQTTA PLTSPSLSFP NNNNPSPTLS SSSSTYSASS SSPSIDAYSN INRLGVGNSN SRGYFNNHSL DYPYPLSSPK
201: QQQQQQTLHH ASALSLHQNA STASQFNALA SATDHKDFRY FQGIGERVGV GAGERTFFPE ASRSFQDSPY HHQQPLATVM NDPFHSGTDH KVDHQHHTYS
301: SVSSSSQHDQ DHHRQQQQQC FVMGADMFNK PTRTVFANSS RQDHQEEEEK DSSETKKSLH HFFGEDWAQN KNSSDSWLDL SSHSRLDTGN L

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.