CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039334.1-P	Field mustard	nucleus	91.89	95.77
CDY37044	Canola	nucleus	94.14	95.65
AT2G45480.3	Thale cress	nucleus	69.82	71.93
CDY55116	Canola	nucleus	14.86	23.4
TraesCS2B01G256600.2	Wheat	nucleus	13.06	22.05
CDX84560	Canola	nucleus	18.24	22.01
CDX79674	Canola	nucleus	18.24	22.01
TraesCS2D01G246600.1	Wheat	nucleus	13.06	21.97
Os07t0467500-01	Rice	nucleus	13.29	21.93
CDY70432	Canola	nucleus	11.94	21.81
CDX75039	Canola	nucleus	18.69	21.56
CDX84126	Canola	nucleus	18.69	21.17
CDY66422	Canola	nucleus	14.86	21.09
CDY13333	Canola	nucleus	17.34	21.04
EER99361	Sorghum	nucleus	12.84	21.03
CDX67545	Canola	nucleus	17.12	20.88
Zm00001d021362_P001	Maize	extracellular, nucleus	12.61	20.82
CDX82503	Canola	nucleus	17.12	20.77
Zm00001d006348_P001	Maize	nucleus	12.61	20.51
CDX75742	Canola	nucleus	16.67	20.27
CDY43721	Canola	nucleus	15.77	19.72
CDY39081	Canola	nucleus	17.57	19.6
CDY51791	Canola	nucleus	14.41	19.57
CDX78132	Canola	nucleus	16.44	19.36
CDY28823	Canola	nucleus	15.09	19.31
CDX73595	Canola	nucleus	16.44	19.16
CDY55209	Canola	nucleus	16.67	18.97
CDX71979	Canola	nucleus	16.44	18.96
CDX97531	Canola	nucleus	16.44	18.81
HORVU2Hr1G054270.3	Barley	plastid	12.61	18.67
CDX83200	Canola	nucleus	16.44	18.53
TraesCS2A01G238700.1	Wheat	nucleus	13.06	18.18
CDX76249	Canola	nucleus	15.77	17.11
CDY03485	Canola	nucleus	13.29	16.95
CDY29584	Canola	nucleus	15.54	16.91
CDY72447	Canola	nucleus, plastid	12.61	16.28
CDY10989	Canola	nucleus	13.74	16.22
CDX72654	Canola	nucleus	15.77	15.84
CDX92617	Canola	nucleus	13.96	15.23
CDX75672	Canola	nucleus	15.32	15.08
CDY33407	Canola	nucleus	13.51	15.0
CDX69322	Canola	nucleus	15.32	14.75
CDY21475	Canola	nucleus	16.22	14.49
CDY66284	Canola	nucleus	15.99	13.2
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.52.1	GO:A0A078GQA3	UniProt:A0A078GQA3	EnsemblPlants:CDY27382	ProteinID:CDY27382	ProteinID:CDY27382.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	EnsemblPlantsGene:GSBRNA2T00037328001
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951	UniParc:UPI0004EEF8EF	InterPro:WRC_dom
SEG:seg	:	:	:	:	:

Description

BnaC04g50230DBnaC04g50230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQA3]

Coordinates

chrLK032203:-:365506..367490

Molecular Weight (calculated)

49875.6 Da

IEP (calculated)

9.535

GRAVY (calculated)

-0.802

Length

444 amino acids

Sequence
(BLAST)

001: MEEEKHSLQS NKMQSPKTEE GDEWRRKKWP CMKAAQLQEF RMQALVYRYI EAGVRVPNHL VVPIWNSLAL SSSSSSSYLI HHNYPSSSNA VLNDKVDPEP
101: TRCRRTDGKK WRCSNKVLLF QKYCERHMHR GRKRSRKLVE SSSSYDVASS SASTKRDNTD GLNSSTESRS VSHGAMSVSS NAQVVTIASL PSARVCDNIP
201: RPSLVVTEST NKIVRRRITD MSYDDFIKQR GATTCVRGFP VQGSERLPSV QKFFPEASDN SSEAAKFSSN RKNEIIARSR EWKNMNVNCC GLFPGIHFSP
301: DTVLQDRGGF GLHRVETDNE PGRCRRTDGK KWRCSKNVLS GQKYCDRHMH RGSIKKKHPV ETTPTHENAG IIRVAVRPDD RSVSCQDGDG QKLPVSVLGR
401: EQLSRVSDEK NTTNSCSTDT TITDIALKGE EDNEEVLSLC SSGV

Best Arabidopsis Sequence Match ( AT2G45480.3 )
(BLAST)

001: MKMQSPKMEQ EEVEEERMRN KWPWMKAAQL MEFRMQALVY RYIEAGLRVP HHLVVPIWNS LALSSSSNYN YHSSSLLSNK GVTHIDTLET EPTRCRRTDG
101: KKWRCSNTVL LFEKYCERHM HRGRKRSRKL VESSSEVASS STKYDNTYGL DRYNESQSHL HGTISGSSNA QVVTIASLPS ARSCENVIRP SLVISEFTNK
201: SVSHGRKNME MSYDDFINEK EASMCVGVVP LQGDESKPSV QKFFPEVSDK CLEAAKFSSN RKNDIIARSR EWKNMNVNGG LFHGIHFSPD TVLQERGCFR
301: LQGVETDNEP GRCRRTDGKK WRCSKDVLSG QKYCDKHMHR GMKKKHPVDT TNSHENAGFS PLTVETAVRS VVPCKDGDDQ KHSVSVMGIT LPRVSDEKST
401: SSCSTDTTIT DTALRGEDDD EEYLSLFSPG V

Arabidopsis Description

GRF9Growth-regulating factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.