Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22840.1 | CDX86202 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY00027 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY05600 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY33883 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY57020 | AT5G28640.1 | 15326298 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000575.1-P | Field mustard | nucleus | 73.64 | 70.66 |
| CDX83200 | Canola | nucleus | 48.69 | 61.42 |
| AT2G22840.1 | Thale cress | nucleus | 65.19 | 61.13 |
| CDY55116 | Canola | nucleus | 29.78 | 52.48 |
| CDY29584 | Canola | nucleus | 41.25 | 50.25 |
| CDY66422 | Canola | nucleus | 31.59 | 50.16 |
| CDX75672 | Canola | nucleus | 42.86 | 47.23 |
| CDX69322 | Canola | nucleus | 43.26 | 46.64 |
| CDX72654 | Canola | nucleus | 41.25 | 46.38 |
| GSMUA_Achr4P32310_001 | Banana | nucleus | 13.48 | 46.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.94 | 33.43 |
| VIT_00s0494g00010.t01 | Wine grape | nucleus | 37.42 | 31.16 |
| KRH05542 | Soybean | nucleus | 36.22 | 30.0 |
| KRG88739 | Soybean | nucleus | 35.21 | 29.46 |
| KRG88736 | Soybean | nucleus | 35.21 | 29.22 |
| KRH05543 | Soybean | nucleus | 35.21 | 28.74 |
| HORVU4Hr1G037480.5 | Barley | nucleus | 18.51 | 28.05 |
| Solyc02g092070.2.1 | Tomato | nucleus | 31.99 | 27.99 |
| Zm00001d007465_P001 | Maize | nucleus | 17.5 | 27.88 |
| Os12t0484900-01 | Rice | nucleus, plastid | 22.54 | 27.12 |
| Zm00001d006338_P002 | Maize | mitochondrion | 14.89 | 26.62 |
| PGSC0003DMT400055151 | Potato | nucleus | 31.99 | 26.54 |
| KXG28671 | Sorghum | nucleus | 19.72 | 26.42 |
| GSMUA_Achr3P15140_001 | Banana | nucleus | 24.75 | 25.2 |
| Zm00001d033876_P004 | Maize | nucleus | 28.97 | 24.28 |
| EER90936 | Sorghum | nucleus | 28.97 | 23.96 |
| GSMUA_Achr8P04970_001 | Banana | nucleus | 27.77 | 23.75 |
| Zm00001d033396_P003 | Maize | nucleus | 20.93 | 23.74 |
| CDX73595 | Canola | nucleus | 18.11 | 23.62 |
| Os03t0729500-01 | Rice | nucleus | 21.33 | 23.25 |
| GSMUA_Achr1P27000_001 | Banana | nucleus | 19.72 | 23.11 |
| CDX67545 | Canola | nucleus | 16.9 | 23.08 |
| CDX78132 | Canola | nucleus | 17.5 | 23.08 |
| GSMUA_Achr7P27480_001 | Banana | nucleus | 27.77 | 22.73 |
| CDY13333 | Canola | nucleus | 16.7 | 22.68 |
| CDY03485 | Canola | nucleus | 15.69 | 22.41 |
| CDX82503 | Canola | nucleus | 16.5 | 22.4 |
| HORVU4Hr1G003440.12 | Barley | nucleus | 18.31 | 22.3 |
| Zm00001d013346_P001 | Maize | nucleus | 26.16 | 22.22 |
| CDX84126 | Canola | nucleus | 17.5 | 22.19 |
| TraesCS4D01G059600.1 | Wheat | nucleus | 25.75 | 22.15 |
| CDX75039 | Canola | nucleus | 17.1 | 22.08 |
| CDX84560 | Canola | nucleus | 16.3 | 22.01 |
| HORVU4Hr1G010080.2 | Barley | nucleus | 26.76 | 21.84 |
| TraesCS4A01G291500.1 | Wheat | nucleus | 17.91 | 21.81 |
| CDY70432 | Canola | nucleus | 10.66 | 21.81 |
| CDX79674 | Canola | nucleus | 16.1 | 21.74 |
| CDY51791 | Canola | nucleus | 14.29 | 21.71 |
| CDX75742 | Canola | nucleus | 15.9 | 21.64 |
| TraesCS4A01G255000.1 | Wheat | nucleus | 26.36 | 21.58 |
| TraesCS4D01G020300.1 | Wheat | nucleus | 17.91 | 21.45 |
| EER93679 | Sorghum | nucleus | 18.71 | 21.38 |
| CDY39081 | Canola | nucleus | 17.1 | 21.36 |
| CDY72447 | Canola | nucleus, plastid | 14.69 | 21.22 |
| CDX97531 | Canola | nucleus | 16.5 | 21.13 |
| Os03t0674700-01 | Rice | nucleus | 18.11 | 21.13 |
| TraesCS4B01G060000.1 | Wheat | nucleus | 25.96 | 21.11 |
| CDX71979 | Canola | nucleus | 16.3 | 21.04 |
| CDY28823 | Canola | nucleus | 14.69 | 21.04 |
| CDY55209 | Canola | nucleus | 16.5 | 21.03 |
| CDX76249 | Canola | nucleus | 17.1 | 20.78 |
| Zm00001d013555_P001 | Maize | nucleus | 18.11 | 20.64 |
| CDY43721 | Canola | nucleus | 13.68 | 19.15 |
| CDY33407 | Canola | nucleus | 14.89 | 18.5 |
| CDY10989 | Canola | nucleus | 13.88 | 18.35 |
| CDX92617 | Canola | nucleus | 14.89 | 18.18 |
| CDY37044 | Canola | nucleus | 14.29 | 16.25 |
| CDY27382 | Canola | nucleus | 14.49 | 16.22 |
| CDY66284 | Canola | nucleus | 16.3 | 15.06 |
| GSMUA_Achr8P26530_001 | Banana | nucleus | 28.97 | 10.04 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 1.01 | 5.1 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078G4U1 | UniProt:A0A078G4U1 | EnsemblPlants:CDY21475 | ProteinID:CDY21475 | ProteinID:CDY21475.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00015890001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF22 | SMART:SM00951 | UniParc:UPI0004EE5D44 | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g27220DBnaC03g27220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4U1]
Coordinates
chrLK032121:+:401445..404457
Molecular Weight (calculated)
54050.3 Da
IEP (calculated)
9.898
GRAVY (calculated)
-0.615
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGVRFEGS VSGHENGSPG QTELGSGFGN KQERSGFDGE DFWRSSKLSR TLIDGFSSSS AAAKTLSFHQ GIPLLRSTSV DPRRQEQMLS FSPASDKSDV
101: SPYLQYCRNS GYGLGGMMNT NSMHGSLLTG AKGPFSLTQW AELEQQALIY KYITANVPVP SSLLLSLKKS FFPYGSLPPN SFGWGSFHLG FSGGNMDPEP
201: GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRYGLGGM MNTNSMHGSL LTGAKGPFSL TQWAELEQQA LIYKYITANV PVPSSLLLSL KKSFFPYGSL
301: PPNSFGWGSF HLGFSGGNMD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK PVEGLNGHNT NATAAASAAS KAETATTVVA MCGSDNNNSL
401: AAVGTHNHAI PSMANSDRVQ NVQGASVFPA TMNLQSKESH QKQSSSPFEF GLISSDSLLN PSHKQPSYAN SSKGFGSYLD FSNQAKNSSM SIPGQKS
101: SPYLQYCRNS GYGLGGMMNT NSMHGSLLTG AKGPFSLTQW AELEQQALIY KYITANVPVP SSLLLSLKKS FFPYGSLPPN SFGWGSFHLG FSGGNMDPEP
201: GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRYGLGGM MNTNSMHGSL LTGAKGPFSL TQWAELEQQA LIYKYITANV PVPSSLLLSL KKSFFPYGSL
301: PPNSFGWGSF HLGFSGGNMD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK PVEGLNGHNT NATAAASAAS KAETATTVVA MCGSDNNNSL
401: AAVGTHNHAI PSMANSDRVQ NVQGASVFPA TMNLQSKESH QKQSSSPFEF GLISSDSLLN PSHKQPSYAN SSKGFGSYLD FSNQAKNSSM SIPGQKS
001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL
Arabidopsis Description
GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.