Factsheet for HORVU4Hr1G003440.12

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G010610.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	HORVU4Hr1G010610.1	AT5G28640.1	15326298
AT4G37740.1	HORVU4Hr1G010610.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G291500.1	Wheat	nucleus	90.93	90.93
TraesCS4D01G020300.1	Wheat	nucleus	90.69	89.16
Os03t0674700-01	Rice	nucleus	71.08	68.08
EER93679	Sorghum	nucleus	66.67	62.53
Zm00001d013555_P001	Maize	nucleus	63.97	59.86
Zm00001d033396_P003	Maize	nucleus	63.73	59.36
CDY55116	Canola	nucleus	23.28	33.69
CDY66422	Canola	nucleus	24.02	31.31
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	14.95	27.23
CDY29584	Canola	nucleus	26.72	26.72
CDX72654	Canola	nucleus	27.45	25.34
CDX69322	Canola	nucleus	28.43	25.16
Bra011781.1-P	Field mustard	nucleus	27.7	25.06
CDX75672	Canola	nucleus	27.7	25.06
HORVU2Hr1G094470.2	Barley	nucleus	15.44	24.9
HORVU6Hr1G065740.4	Barley	nucleus	12.99	24.88
CDX83200	Canola	nucleus	24.02	24.87
Bra017851.1-P	Field mustard	nucleus	27.21	24.83
HORVU4Hr1G037480.5	Barley	nucleus	19.61	24.39
HORVU7Hr1G034610.4	Barley	mitochondrion	18.14	23.64
VIT_18s0001g08650.t01	Wine grape	nucleus	32.11	21.69
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	21.08	21.55
Bra000575.1-P	Field mustard	nucleus	27.21	21.43
AT2G22840.1	Thale cress	nucleus	27.7	21.32
AT4G37740.1	Thale cress	nucleus	27.7	21.12
Solyc04g077510.2.1	Tomato	nucleus	30.15	20.67
KRG88739	Soybean	nucleus	29.9	20.54
HORVU6Hr1G068370.1	Barley	nucleus	19.61	20.51
KRH05542	Soybean	nucleus	29.9	20.33
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	29.66	20.27
KRH05543	Soybean	nucleus	29.66	19.87
HORVU6Hr1G081210.1	Barley	nucleus	20.1	19.85
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	10.29	19.81
KRG88736	Soybean	nucleus	28.92	19.7
HORVU4Hr1G010080.2	Barley	nucleus	27.94	18.72
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	14.22	18.47
CDY21475	Canola	nucleus	22.3	18.31
HORVU0Hr1G016610.1	Barley	plastid	18.14	17.75
HORVU2Hr1G054270.3	Barley	plastid	12.25	16.67
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	3.19	11.4

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A287MYN3	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	EnsemblPlantsGene:HORVU4Hr1G003440	EnsemblPlants:HORVU4Hr1G003440.12	InterPro:IPR014977	InterPro:IPR014978
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF18
SMART:SM00951	UniParc:UPI000B47F1DD	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:+:7582926..7589204

Molecular Weight (calculated)

45271.0 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.842

Length

408 amino acids

Sequence
(BLAST)

001: MELGQVLGFT PPAPKDAQRS GGFAQATAGP YPYPSPFLDQ QKMLSFSKAA AAPPPSTGMD FGRSNEQRLL LARSKMPFTP SQWMELEHQA LIYKYLNAKT
101: PIPSSLLISI SKSFRSSSDR MTWRPAYQGF TNADSDPEPG RCRRTDGKKW RCSKEAMAEH KYCERHINRN RHRSRKPVEN QTRKNAKEAP AAGPLSSAVS
201: QGGCKKSKAS EELKPGSVSY WTDSLNRAMV SKARGNNPEE GNSAPLINST NQQHTLSLLS QLKQQTKPDK FSPAVDSESI SSNTVLKPWE ISNQQSSKDI
301: SSTTPHDRGC LQSVLQDFSM HKNEKIESQK NNASVPPTFY SSTEGPRISC LTSNMMQVQE DCISSSWEIP QGGPLGEILT NSKNTDDLTN KCESRSYGWL
401: LSLDEHEM

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.