Factsheet for Zm00001d033396_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Zm00001d033905_P001	AT5G28640.1	15326298
AT4G37740.1	Zm00001d033905_P001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93679	Sorghum	nucleus	85.84	86.44
Zm00001d013555_P001	Maize	nucleus	84.02	84.4
Os03t0674700-01	Rice	nucleus	64.38	66.2
HORVU4Hr1G003440.12	Barley	nucleus	59.36	63.73
TraesCS4D01G020300.1	Wheat	nucleus	59.82	63.13
TraesCS4A01G291500.1	Wheat	nucleus	58.68	62.99
Zm00001d005387_P001	Maize	nucleus	6.39	45.16
Zm00001d042010_P001	Maize	nucleus	7.08	44.93
CDY55116	Canola	nucleus	21.92	34.04
Zm00001d014421_P001	Maize	cytosol	7.31	32.65
CDY66422	Canola	nucleus	23.06	32.27
Zm00001d051456_P001	Maize	nucleus	15.3	30.32
CDY29584	Canola	nucleus	26.48	28.43
CDX75672	Canola	nucleus	27.85	27.05
Bra011781.1-P	Field mustard	nucleus	27.85	27.05
CDX72654	Canola	nucleus	27.17	26.92
Zm00001d007465_P001	Maize	nucleus	19.18	26.92
Bra017851.1-P	Field mustard	nucleus	27.4	26.85
CDX69322	Canola	nucleus	27.85	26.46
CDX83200	Canola	nucleus	23.52	26.14
Bra000575.1-P	Field mustard	nucleus	28.31	23.94
Zm00001d035965_P004	Maize	nucleus	20.78	23.88
Zm00001d045533_P001	Maize	nucleus	19.86	23.77
AT2G22840.1	Thale cress	nucleus	28.31	23.4
AT4G37740.1	Thale cress	nucleus	27.63	22.62
Zm00001d006338_P002	Maize	mitochondrion	14.16	22.3
Zm00001d002429_P003	Maize	nucleus	18.26	22.28
Zm00001d037117_P001	Maize	mitochondrion, nucleus	18.72	22.28
Zm00001d026240_P006	Maize	plastid	19.18	21.16
Zm00001d017742_P001	Maize	plastid	19.63	21.08
Zm00001d018260_P001	Maize	mitochondrion	18.04	21.01
CDY21475	Canola	nucleus	23.74	20.93
Zm00001d013346_P001	Maize	nucleus	27.4	20.51
Zm00001d000238_P001	Maize	nucleus	18.26	20.41
Zm00001d033876_P004	Maize	nucleus	26.94	19.9
Zm00001d006348_P001	Maize	nucleus	12.33	19.78
Zm00001d021362_P001	Maize	extracellular, nucleus	12.1	19.7
Zm00001d052112_P001	Maize	mitochondrion, nucleus	18.04	19.7
Zm00001d002049_P001	Maize	cytosol, plastid	1.83	8.16

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6KYT0	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	ProteinID:ONM07540.1	ProteinID:ONM07542.1
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF18
SMART:SM00951	UniParc:UPI00084298B0	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d033396	EnsemblPlants:Zm00001d033396_P003	EnsemblPlants:Zm00001d033396_T003
SEG:seg	:	:	:	:	:

Description

GRF-transcription factor 4Growth-regulating factor 2

Coordinates

chr1:-:261791305..261794041

Molecular Weight (calculated)

47709.9 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.697

Length

438 amino acids

Sequence
(BLAST)

001: MSAEFCAAAA GAVAMELGVG DVMGLQQGIA AATGPSSGDS DLGLLKRAGL AQAATSYPSP FLDQQKMLRF SKAAAAHTSP SGLDFGGGPS EQAFLLSRTK
101: RPFTPSQWME LEHQALIYKY LNAKAPIPSS LLVSISKSFR SSNRELDRLS NAVSWRPLYQ GYANADSDPE PGRCRRTDGK KWRCSKEAMP DHKYCERHIN
201: RNRHRSRKPV ENQPRKATKE VTTAAAGSLP CAGPQGSLKK AKVNDSKPGT GSYWTDSLNR TMLSREKANK PTDDESLLLS STKNSQPTLS LLTQLKQQNK
301: PDKLGPTPEN EPNSDTMLKA WGGSHHKSIS STQRHDAESL QSVLQNFSLA QNDRLESEKN RYSDSVLVSS AFYSADGPQT TCLTPNMTQV QQDCISSSWE
401: MPQGGPLGEI LTNSKISEDL SKCGSRSYGW LLNLDHAP

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.