Factsheet for Os04t0600900-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G435100.1	Wheat	nucleus	72.14	72.14
TraesCS2B01G458400.1	Wheat	nucleus, plastid	72.14	71.58
TraesCS2D01G435200.1	Wheat	nucleus, plastid	72.14	70.84
Os02t0701300-01	Rice	nucleus, plastid	71.61	69.8
Zm00001d017742_P001	Maize	plastid	64.58	60.78
OQU85555	Sorghum	plastid	64.06	56.29
Os06t0204800-00	Rice	nucleus	28.39	36.21
Os02t0678800-01	Rice	nucleus	19.01	34.6
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	20.57	33.47
Os02t0776900-01	Rice	mitochondrion, nucleus	33.07	31.99
Os03t0729500-01	Rice	nucleus	26.82	22.59
Os07t0467500-01	Rice	nucleus	15.62	22.3
Os12t0484900-01	Rice	nucleus, plastid	23.7	22.03
Os11t0551900-01	Rice	nucleus	8.85	21.79
Os03t0674700-01	Rice	nucleus	21.88	19.72

Protein Annotations

MapMan:15.5.52.1	EntrezGene:4336879	UniProt:A0A0P0WEB0	ProteinID:BAS90837.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
EnsemblPlantsGene:Os04g0600900	EnsemblPlants:Os04t0600900-02	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF21	SMART:SM00951	UniParc:UPI0000E582D0	InterPro:WRC_dom	RefSeq:XP_015634334.1
SEG:seg	:	:	:	:	:

Description

GROWTH-REGULATING FACTOR 3Similar to B0403H10-OSIGBa0105A11.9 protein. (Os04t0600900-01);Transcriptional activator/repressor, Reguration of KNOX gene, Oskn2 (Regulator of meristem function) (Os04t0600900-02)

Coordinates

chr4:-:30317749..30321610

Molecular Weight (calculated)

41288.1 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.428

Length

384 amino acids

Sequence
(BLAST)

001: MAMPFASLSP AADHRPSFIF PFCRSSPLSA VGEEAQQHMM GARWAAAVAR PPPFTAAQYE ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH
101: PVLGYGSYFG KKLDPEPGRC RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPHSQPPAT APAAAVTSTA FQNHSLYPAI ANGGGANGGG
201: GGGGGGGSAP GSFALGSNTQ LHMDNAASYS TVAAGAGNKD FRYSAYGVRP LADEHSPLIT GAMDTSIDNS WCLLPSQTST FSVSSYPMLG NLSELDQNTI
301: CSLPKVEREP LSFFGSDYVT VDSGKQENQT LRPFFDEWPK ARDSWPDLAD DNSLATFSAT QLSISIPMAT SDFSTTSSRS HNDE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.