Factsheet for Os04t0574500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G398300.2	Wheat	nucleus	70.76	74.22
TraesCS2D01G395900.1	Wheat	nucleus	71.61	73.8
TraesCS2B01G416300.1	Wheat	nucleus	70.76	73.57
Zm00001d051456_P001	Maize	nucleus	68.22	72.85
Os02t0678800-01	Rice	nucleus	64.41	72.04
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	65.68	69.2
GSMUA_Achr5P20170_001	Banana	extracellular	47.46	65.5
HORVU2Hr1G094470.2	Barley	nucleus	69.92	65.22
GSMUA_Achr8P12060_001	Banana	extracellular	49.15	57.43
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	47.03	54.15
VIT_02s0025g04910.t01	Wine grape	nucleus	31.78	35.89
PGSC0003DMT400009997	Potato	nucleus	14.83	28.69
Solyc08g079800.2.1	Tomato	nucleus	24.58	26.61
Os07t0467500-01	Rice	nucleus	27.54	24.16
Os06t0204800-00	Rice	nucleus	27.54	21.59
Os04t0600900-02	Rice	plastid	33.47	20.57
Os02t0701300-01	Rice	nucleus, plastid	31.36	18.78
Os11t0551900-01	Rice	nucleus	12.29	18.59
Os12t0484900-01	Rice	nucleus, plastid	29.66	16.95
Os02t0776900-01	Rice	mitochondrion, nucleus	25.42	15.11
Os03t0674700-01	Rice	nucleus	27.12	15.02
Os03t0729500-01	Rice	nucleus	28.81	14.91

Protein Annotations

MapMan:15.5.52.1	EntrezGene:4336731	EMBL:AK110934	ProteinID:BAF15532.1	ProteinID:BAS90599.1	ProteinID:CAD41671.3
ProteinID:DAA04956.1	ProteinID:EEE61538.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlantsGene:Os04g0574500	EnsemblPlants:Os04t0574500-01
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3
UniProt:Q6AWX7	SMART:SM00951	UniParc:UPI000021C9D5	InterPro:WRC_dom	RefSeq:XP_015635359.1	SEG:seg

Description

GROWTH-REGULATING FACTOR 12Similar to Growth-regulating factor 12. (Os04t0574500-01)

Coordinates

chr4:+:28921895..28923696

Molecular Weight (calculated)

24971.9 Da

IEP (calculated)

10.240

GRAVY (calculated)

-0.200

Length

236 amino acids

Sequence
(BLAST)

001: MLAEGRQVYL PPPPPSKLPR LSGTDPTDGV VTMAAPSPLV LGLGLGLGGS GSDSSGSDAE ASAATVREAR PPSALTFMQR QELEQQVLIY RYFAAGAPVP
101: VHLVLPIWKS IAAASSFGPQ SFPSLTGLGS LCFDYRSSME PEPGRCRRTD GKKWRCSRDV VPGHKYCERH VHRGRGRSRK PMEASAAVAP TYLPVRPALH
201: TVATLATSAP SLSHLGFSSA SKVLLAHTTT GTTRAT

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.