Factsheet for TraesCS3B01G164500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G255000.1
TraesCS4A01G291500.1
TraesCS4B01G060000.1
TraesCS4D01G020300.1
TraesCS4D01G059600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	TraesCS4A01G255000.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4A01G291500.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4B01G060000.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4D01G020300.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4D01G059600.1	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G146900.1	Wheat	nucleus	98.67	97.8
TraesCS3A01G140100.1	Wheat	nucleus	97.33	95.84
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	97.78	74.58
Zm00001d008919_P001	Maize	nucleus, plastid	70.0	74.12
Os01t0213800-01	Rice	mitochondrion	82.22	63.9
Zm00001d039371_P001	Maize	mitochondrion	78.22	62.3
OQU86111	Sorghum	plastid	79.56	57.1
GSMUA_Achr10P...	Banana	nucleus	32.44	55.09
GSMUA_Achr10P...	Banana	nucleus	30.0	54.22
GSMUA_Achr6P14430_001	Banana	nucleus	27.11	50.83
VIT_19s0014g01680.t01	Wine grape	nucleus	44.44	50.25
KRH27317	Soybean	nucleus	40.89	48.81
PGSC0003DMT400032269	Potato	nucleus	42.89	48.25
Solyc07g062680.1.1	Tomato	nucleus	42.67	48.0
GSMUA_Achr3P03540_001	Banana	nucleus	42.44	47.51
KRH26201	Soybean	nucleus	41.33	46.85
KRH55125	Soybean	nucleus	40.22	46.29
KRH21998	Soybean	nucleus	39.78	45.55
Bra021586.1-P	Field mustard	nucleus	34.89	44.86
KRH22307	Soybean	nucleus	34.0	44.48
KRH27017	Soybean	nucleus	33.78	44.31
AT3G15030.1	Thale cress	nucleus	41.33	44.29
Bra001579.1-P	Field mustard	nucleus	39.78	43.98
Bra027284.1-P	Field mustard	nucleus	39.11	43.35
Solyc12g014140.1.1	Tomato	nucleus	37.33	42.64
AT1G53230.1	Thale cress	nucleus	36.89	42.46
KRH25697	Soybean	nucleus	27.33	42.27
PGSC0003DMT400039786	Potato	nucleus	39.33	42.04
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	43.33	41.4
Solyc07g053410.2.1	Tomato	cytosol	22.44	41.39
Bra030952.1-P	Field mustard	nucleus	31.11	40.58
VIT_12s0028g02520.t01	Wine grape	nucleus	27.33	40.07
PGSC0003DMT400024329	Potato	nucleus	27.56	39.87
Solyc10g018710.1.1	Tomato	nucleus	14.44	38.01
KRH55819	Soybean	nucleus	28.0	37.84
Solyc05g012840.1.1	Tomato	nucleus	18.67	37.67
Bra018280.1-P	Field mustard	nucleus	28.67	36.96
AT2G31070.1	Thale cress	nucleus	29.56	36.84
Solyc05g032780.1.1	Tomato	nucleus	15.33	32.55
Solyc11g045640.1.1	Tomato	nucleus	15.56	31.96
PGSC0003DMT400059117	Potato	nucleus	22.89	30.84
VIT_10s0003g00870.t01	Wine grape	nucleus	24.0	28.27
Solyc02g077250.2.1	Tomato	nucleus	22.0	27.97
TraesCS5B01G426200.1	Wheat	nucleus	22.67	25.25
TraesCS5B01G032000.1	Wheat	nucleus	16.44	24.67
TraesCS3B01G333400.1	Wheat	nucleus	14.67	23.57
TraesCS2B01G265800.1	Wheat	nucleus	21.11	22.41
TraesCS2B01G025700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	9.33	20.59
TraesCS1B01G346300.1	Wheat	nucleus	13.78	20.13
PGSC0003DMT400068478	Potato	nucleus	22.89	19.77
TraesCS5B01G205600.1	Wheat	cytosol	11.78	19.34
Solyc10g008780.1.1	Tomato	nucleus	23.11	17.87
TraesCS5B01G002300.1	Wheat	nucleus	11.11	16.95
TraesCS4B01G042700.1	Wheat	nucleus	13.11	16.67

Protein Annotations

EnsemblPlants:TraesCS3B01G164500.1	EnsemblPlantsGene:TraesCS3B01G164500	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	PFAM:PF03634	PFscan:PS51369	SEG:seg	MapMan:15.5.19	:

Description

No Description!

Coordinates

chr3B:+:162222924..162224276

Molecular Weight (calculated)

47038.9 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.647

Length

450 amino acids

Sequence
(BLAST)

001: MGDAGQSHHH HGLQTQLLSF GGAGSHHHHM HQFTAQAQPP AASQTRARGG RGGEMVPATP ARVRGGGGGE IVAVQGGHIV RSTGRKDRHS KVCTARGPRD
101: RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKNAKDAI DNLDTLPAWQ PTAVAPAASN AAAPPSSSTQ PDSADNSDDQ AQAITIAHSS FDFAGSGGAG
201: GATGGISFLP PSLDSDSIAD TIKSFFPMGG TTGGEPSSST VAAHSSAMGF QGYTPDLLSR TGSQSQELRL SLQPLPDPMF HHHQQQEQHR SDGHDGNGTA
301: QQTLFPGAAS YSFGGGGAMW GEQAASQRMM PWNVPDPGGG STGGYLFNVS QQAAHMQAAL SGQSQFFFQR GPLQSSNQPS DRGWPETVEA DDNNPMQQHQ
401: GGLNPSVSAI GFGPGVSFSG FRVPARMQGN EEHNGGNGDK PPSVSSASHH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.