Factsheet for VIT_19s0014g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	34.92	57.68
KRH27317	Soybean	nucleus	50.5	53.32
KRH21998	Soybean	nucleus	51.26	51.91
VIT_12s0028g02520.t01	Wine grape	nucleus	34.67	44.95
TraesCS3B01G164500.1	Wheat	nucleus	50.25	44.44
TraesCS3A01G140100.1	Wheat	nucleus	50.75	44.2
TraesCS3D01G146900.1	Wheat	nucleus	50.0	43.83
Zm00001d008919_P001	Maize	nucleus, plastid	46.48	43.53
Os01t0213800-01	Rice	mitochondrion	52.01	35.75
Zm00001d039371_P001	Maize	mitochondrion	49.75	35.04
VIT_10s0003g00870.t01	Wine grape	nucleus	33.17	34.55
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	51.01	34.41
Os01t0755500-01	Rice	cytosol, mitochondrion	37.69	33.63
KXG33398	Sorghum	nucleus	37.44	33.04
Zm00001d043423_P001	Maize	nucleus	35.18	32.26
OQU86111	Sorghum	plastid	50.75	32.22
HORVU0Hr1G006890.2	Barley	cytosol	13.57	25.12
VIT_10s0003g03910.t01	Wine grape	nucleus	24.37	21.85
VIT_14s0068g00330.t01	Wine grape	nucleus	18.84	21.49
Zm00001d012725_P002	Maize	plastid	35.43	20.2
VIT_14s0083g00150.t01	Wine grape	nucleus	12.56	15.15
VIT_17s0000g04180.t01	Wine grape	nucleus	13.32	14.48
VIT_01s0011g02920.t01	Wine grape	nucleus	13.57	12.33

Protein Annotations

EntrezGene:100248756	wikigene:100248756	MapMan:15.5.19	ProteinID:CCB46278	ProteinID:CCB46278.1	UniProt:F6H1Y2
EMBL:FN595229	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EntrezGene:LOC100248756
wikigene:LOC100248756	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF66	TIGR:TC57954
TIGR:TC63299	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00015C81FC	ArrayExpress:VIT_19s0014g01680	EnsemblPlantsGene:VIT_19s0014g01680
EnsemblPlants:VIT_19s0014g01680.t01	RefSeq:XP_003634670	RefSeq:XP_003634670.1	RefSeq:XP_019072942.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:1805453..1807492

Molecular Weight (calculated)

43309.0 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.695

Length

398 amino acids

Sequence
(BLAST)

001: MGETHQQQQA ASSSRMGMRS VVGGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKAAIDELAQ
101: LPAWHPTAIT VTAAAAAATT ATTTHHQEDE ENPNQVAIDG DDDRVQMHHG NNPDPNPNPN PNQNPSFLPP SLDSDTIADT IKSFFPMGAS GESSSSSVQF
201: QSYPPDLLSR TSSQNQDLRL SLQSFQDPML LHHHHTQSHS HHQQQALFSP LGFDAPSAAW SEHHAAEMGR FQRMVAWNAG AESSGGGGFV FNSPPTPTPA
301: PPPLQPLFCQ SQMYSQRGPL QSSNTPSIRA WIDPPIAATI DHHHHHHQTT PIQPSMISGI GFVPGGFSGF RIPARIQGEE EHDGISDKPS SASSDSRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.