Factsheet for Zm00001d012725_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002049_P001
Zm00001d006338_P002
Zm00001d007465_P001
Zm00001d013346_P001
Zm00001d013555_P001
Zm00001d033396_P003
Zm00001d033876_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	Zm00001d002049_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d006338_P002	AT2G22840.1	21245844
AT2G31070.1	Zm00001d007465_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d013346_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d013555_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d033396_P003	AT2G22840.1	21245844
AT2G31070.1	Zm00001d033876_P004	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33398	Sorghum	nucleus	54.01	83.59
Zm00001d043423_P001	Maize	nucleus	50.86	81.8
Os01t0755500-01	Rice	cytosol, mitochondrion	45.42	71.08
HORVU0Hr1G006890.2	Barley	cytosol	15.76	51.16
GSMUA_Achr3P31370_001	Banana	nucleus	13.61	36.4
VIT_19s0014g01680.t01	Wine grape	nucleus	20.2	35.43
KRH26201	Soybean	nucleus	19.63	34.51
KRH27317	Soybean	nucleus	18.62	34.48
Solyc05g012840.1.1	Tomato	nucleus	10.89	34.08
KRH55125	Soybean	nucleus	18.77	33.5
PGSC0003DMT400032269	Potato	nucleus	19.2	33.5
Solyc07g062680.1.1	Tomato	nucleus	19.2	33.5
KRH21998	Soybean	nucleus	18.62	33.08
GSMUA_Achr7P13980_001	Banana	nucleus	17.34	32.88
Solyc07g053410.2.1	Tomato	cytosol	11.46	32.79
AT3G15030.1	Thale cress	nucleus	19.63	32.62
Solyc10g018710.1.1	Tomato	nucleus	7.88	32.16
Bra021586.1-P	Field mustard	nucleus	16.05	32.0
Solyc12g014140.1.1	Tomato	nucleus	18.05	31.98
Bra030952.1-P	Field mustard	nucleus	15.76	31.88
KRH22307	Soybean	nucleus	15.62	31.69
KRH27017	Soybean	nucleus	15.47	31.49
PGSC0003DMT400024329	Potato	nucleus	13.9	31.19
Bra001579.1-P	Field mustard	nucleus	17.91	30.71
Bra027284.1-P	Field mustard	nucleus	17.62	30.3
AT1G53230.1	Thale cress	nucleus	16.91	30.18
PGSC0003DMT400039786	Potato	nucleus	18.19	30.17
VIT_12s0028g02520.t01	Wine grape	nucleus	13.18	29.97
Zm00001d008919_P001	Maize	nucleus, plastid	18.19	29.88
Solyc11g045640.1.1	Tomato	nucleus	9.31	29.68
KRH25697	Soybean	nucleus	12.32	29.55
Bra018280.1-P	Field mustard	nucleus	14.04	28.08
Solyc05g032780.1.1	Tomato	nucleus	8.31	27.36
KRH55819	Soybean	nucleus	13.04	27.33
PGSC0003DMT400059117	Potato	nucleus	12.89	26.95
AT2G31070.1	Thale cress	nucleus	13.75	26.59
Zm00001d039371_P001	Maize	mitochondrion	21.35	26.37
Solyc02g077250.2.1	Tomato	nucleus	13.04	25.71
VIT_10s0003g00870.t01	Wine grape	nucleus	13.61	24.87
CDX97627	Canola	mitochondrion	8.88	22.63
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	12.03	22.05
Zm00001d022256_P001	Maize	nucleus	9.89	21.36
Zm00001d038683_P001	Maize	cytosol	9.03	21.14
Zm00001d010730_P001	Maize	cytosol, plastid	8.31	21.09
Zm00001d034353_P001	Maize	cytosol	11.46	20.73
Zm00001d043368_P001	Maize	cytosol	7.74	19.08
Zm00001d020433_P001	Maize	nucleus	6.59	18.18
PGSC0003DMT400068478	Potato	nucleus	13.32	17.85
Zm00001d032217_P001	Maize	cytosol	6.02	17.5
Zm00001d005737_P001	Maize	cytosol	6.59	16.67
Solyc10g008780.1.1	Tomato	nucleus	13.75	16.49
Zm00001d007868_P001	Maize	nucleus	10.03	15.91
Zm00001d018806_P001	Maize	nucleus	9.89	15.79
Zm00001d050389_P001	Maize	nucleus	5.87	14.96
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	7.74	14.75
Zm00001d013467_P001	Maize	nucleus	7.02	13.65

Protein Annotations

MapMan:15.5.19	Gene3D:3.80.10.10	UniProt:A0A1D6GBE2	ProteinID:AQL00404.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF16	SUPFAM:SSF52058	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000842EC76
EnsemblPlantsGene:Zm00001d012725	EnsemblPlants:Zm00001d012725_P002	EnsemblPlants:Zm00001d012725_T002	SEG:seg	:	:

Description

TCP-transcription factor 29Transcription factor TCP4

Coordinates

chr8:-:179214402..179228713

Molecular Weight (calculated)

75087.7 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.526

Length

698 amino acids

Sequence
(BLAST)

001: MPPPYSDALT GLPPTSSGKQ RKLHRQRSQS SSASDQHSTT RGRLKLACRE TVEGQRQSLD ETRQLLDQRN ISGAIPAALG NAKSLKFLRL DHNRLKGPIP
101: RELAGLPNLG IVDFSNNDLC GAIPTDGAFQ NIPRSSELLL VDACQHIPGD PSTSFSVFTV TTLPFVQQIV AETSGTTLTF VIIDKWVVTV ASIGDSHCGQ
201: CYIFISKNCL MFIIFLFFSV KRVMPCGSKV GKMDIGGGPE VKYSHSQETG SPTKWSAEVS TLKLEEDKNQ LSKGLDPWSN PTAATSTLHY LLQEKERAQA
301: HEQLQIYHQQ GFSYLQHRRR QQQQQQQPRA AGAGSDGVSS GESTPVDALA TAFGSGRIVR SAAGRKDRHS KVCTARGLRD RRVRLAAHTA IRFYDVQDRL
401: GYDRPSKAVD WLIRNAKAAI DELSADREEG QPAAEAADAT TTEPAEQVTS TSYGFAIGGV AGSFMPHSVG ADDVSGSGSG SGSGNVKSLF PSSSTTSTTP
501: TQDEYRGSPP DLLSRTTSSN QPQELCLTLQ STNNHHHQQQ QQQQIFSHVS PNHHGSMISV AGVQGWPEAH GQRMPPWHAP ENSGAGDDGR GAAGNGDSYM
601: FGVPGPRQGL DHLQGQLIFS QGEPLQSSGG GWPSSSARAW LDPLVAIHQH QPSTMSGQVG FGHLVGGAGS GFMGFLAPPA QRLQLQSEDE QGSEAMRE

Best Arabidopsis Sequence Match ( AT3G15030.1 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.