Factsheet for GSMUA_Achr7P13980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	46.74	71.37
GSMUA_Achr10P...	Banana	nucleus	43.21	63.86
GSMUA_Achr6P14430_001	Banana	nucleus	33.97	52.08
GSMUA_Achr3P03540_001	Banana	nucleus	56.52	51.74
GSMUA_Achr10P...	Banana	nucleus	36.68	50.94
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	59.78	46.71
GSMUA_Achr3P31370_001	Banana	nucleus	31.79	44.83
CDX97627	Canola	mitochondrion	20.65	27.74
KXG33398	Sorghum	nucleus	32.88	26.83
Zm00001d043423_P001	Maize	nucleus	31.52	26.73
Os01t0755500-01	Rice	cytosol, mitochondrion	32.34	26.68
GSMUA_Achr2P12990_001	Banana	nucleus	22.83	22.22
GSMUA_Achr7P01160_001	Banana	nucleus	22.28	21.47
GSMUA_Achr4P31520_001	Banana	nucleus	21.74	21.05
GSMUA_Achr4P22960_001	Banana	nucleus	21.74	20.94
GSMUA_Achr5P02530_001	Banana	nucleus	21.47	20.68
GSMUA_Achr6P27420_001	Banana	nucleus	16.58	20.4
GSMUA_Achr4P32850_001	Banana	nucleus	16.58	17.78
Zm00001d012725_P002	Maize	plastid	32.88	17.34
HORVU0Hr1G006890.2	Barley	cytosol	10.05	17.21
GSMUA_Achr2P21050_001	Banana	mitochondrion	11.68	16.48
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	12.5	13.94
GSMUA_Achr2P22480_001	Banana	cytosol	12.23	13.89

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G13980_001	EnsemblPlants:GSMUA_Achr7P13980_001
EnsemblPlants:GSMUA_Achr7T13980_001	InterPro:IPR017887	UniProt:M0THD5	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295F76D	SEG:seg	:

Description

Putative Transcription factor TCP3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G13980_001]

Coordinates

chr7:-:11209115..11210290

Molecular Weight (calculated)

40031.6 Da

IEP (calculated)

8.073

GRAVY (calculated)

-0.490

Length

368 amino acids

Sequence
(BLAST)

001: MGKGHSHHGL GYNQLSLHHH QQRPQNRSLN DWVRGGSVGE IVEVHAGHIV RSTGRKDRHS KVCTAKGLRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD
101: WLIKNAKAAI DKLAELPPWT PSASKLTAPH TASSSCRPPP SDQFPSTEQN MTEFSEEPFA VGAPLLDSET LADVIKFFCP MVASATTAPF ATPSIRLDSY
201: LSDLPSRTSS QAQDLRLSLQ SFQDPVFHTL ESGHQHHHHA QCLRSPNAAT SDAHFLSSAN LAFNAASVST EAFGSAVPLH SVLGQSQLFF QRGPLQSGNS
301: PVVHAREDTV DAGADHRVQT KVHPCTSPIG FTSVASFSGF HIPARIQGEE KHDSITDKPP SASSAPRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.