Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P01160_001 | Banana | nucleus | 74.34 | 73.56 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 74.07 | 73.3 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 73.02 | 72.25 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 69.58 | 69.21 |
| OQU89064 | Sorghum | cytosol | 12.43 | 58.75 |
| Os03t0785800-01 | Rice | nucleus | 45.24 | 47.9 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 53.97 | 45.95 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 48.15 | 43.75 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 47.62 | 43.69 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 48.41 | 43.16 |
| Os07t0152000-01 | Rice | nucleus | 49.21 | 41.8 |
| AT4G18390.1 | Thale cress | nucleus | 39.95 | 41.37 |
| AT1G30210.1 | Thale cress | nucleus | 35.45 | 41.36 |
| Zm00001d018806_P001 | Maize | nucleus | 47.35 | 40.96 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 41.27 | 40.94 |
| PGSC0003DMT400051253 | Potato | nucleus | 37.04 | 40.94 |
| Zm00001d007868_P001 | Maize | nucleus | 47.62 | 40.91 |
| Zm00001d034353_P001 | Maize | cytosol | 41.53 | 40.67 |
| KXG37409 | Sorghum | cytosol | 41.8 | 40.62 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 31.22 | 40.0 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 31.48 | 39.67 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 30.95 | 39.66 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 41.8 | 39.5 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 30.95 | 39.39 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 41.01 | 38.65 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 47.09 | 38.61 |
| Solyc08g048390.1.1 | Tomato | nucleus | 39.42 | 38.5 |
| KRH42567 | Soybean | nucleus | 47.62 | 38.46 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 41.01 | 38.37 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 41.01 | 38.27 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 30.42 | 38.08 |
| KRH58674 | Soybean | nucleus | 47.88 | 37.87 |
| KRH11155 | Soybean | nucleus | 49.74 | 36.79 |
| KRH21093 | Soybean | nucleus | 50.53 | 35.9 |
| Zm00001d022256_P001 | Maize | nucleus | 30.42 | 35.6 |
| Solyc08g048370.2.1 | Tomato | cytosol | 29.37 | 34.05 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 47.35 | 32.66 |
| CDX78849 | Canola | nucleus, plastid | 20.37 | 32.22 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 20.37 | 32.22 |
| GSMUA_Achr10P... | Banana | nucleus | 19.84 | 30.12 |
| GSMUA_Achr8P19990_001 | Banana | nucleus | 19.05 | 29.88 |
| GSMUA_Achr6P14430_001 | Banana | nucleus | 18.52 | 29.17 |
| GSMUA_Achr3P31370_001 | Banana | nucleus | 19.84 | 28.74 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 13.76 | 25.0 |
| GSMUA_Achr10P... | Banana | nucleus | 17.2 | 24.53 |
| GSMUA_Achr7P13980_001 | Banana | nucleus | 22.22 | 22.83 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 19.84 | 21.87 |
| GSMUA_Achr3P03540_001 | Banana | nucleus | 23.02 | 21.64 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 16.93 | 21.4 |
| GSMUA_Achr5P06660_001 | Banana | mitochondrion, plastid | 23.02 | 18.47 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 13.49 | 15.45 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 10.32 | 14.94 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 10.85 | 12.65 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr2G12990_001 | EnsemblPlants:GSMUA_Achr2P12990_001 |
| EnsemblPlants:GSMUA_Achr2T12990_001 | InterPro:IPR017887 | UniProt:M0S7J0 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000295D291 | SEG:seg | : |
Description
Putative Transcription factor PCF6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G12990_001]
Coordinates
chr2:-:15268634..15269914
Molecular Weight (calculated)
41225.1 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.803
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MELEENNHAC KRSWAAGNGG QAAKIGRTEH QDEDEEDGER KGGGGADTSR WGPWQHHPSS RIFRVSRASG GKDRHSKVYT AKGLRDRRIR LSVSTAIQFY
101: DLQDRLGYDQ PSKAIEWLIK AAAAAINELP PLDCFPKPPD PCGDETMNAD RDVEPSYDQQ QQQQHPSNKS GCSSSSDTSK GSVLDDSGYI VASHHRNLNP
201: QTSSFTELLT GGISNADYFG QDCLFAQSQR SHPLPSGFSS QSHFGNSSPM GMLSFNIAAA GDHPEMQQFS SLQDHLFPFA ATGNYNHNFS ISSGLAGFNR
301: GTLQSNSPAH LPQLHHDSHN HLQRLSSTVD GSNLQFFFGS AAAAANAENQ LPAAFDGRLQ LYYGDGYRHS DLKGKGKS
101: DLQDRLGYDQ PSKAIEWLIK AAAAAINELP PLDCFPKPPD PCGDETMNAD RDVEPSYDQQ QQQQHPSNKS GCSSSSDTSK GSVLDDSGYI VASHHRNLNP
201: QTSSFTELLT GGISNADYFG QDCLFAQSQR SHPLPSGFSS QSHFGNSSPM GMLSFNIAAA GDHPEMQQFS SLQDHLFPFA ATGNYNHNFS ISSGLAGFNR
301: GTLQSNSPAH LPQLHHDSHN HLQRLSSTVD GSNLQFFFGS AAAAANAENQ LPAAFDGRLQ LYYGDGYRHS DLKGKGKS
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.