Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G252100.1 | Wheat | nucleus | 95.28 | 97.12 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 89.39 | 91.99 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 95.05 | 73.54 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 46.23 | 51.44 |
| Os03t0785800-01 | Rice | nucleus | 42.45 | 50.42 |
| KXG37409 | Sorghum | cytosol | 46.23 | 50.39 |
| Zm00001d034353_P001 | Maize | cytosol | 45.28 | 49.74 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 43.87 | 48.69 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 43.16 | 48.41 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 45.52 | 47.77 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 42.92 | 47.64 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 42.45 | 47.37 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 42.45 | 47.12 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 45.52 | 43.47 |
| PGSC0003DMT400051253 | Potato | nucleus | 34.67 | 42.98 |
| AT1G30210.1 | Thale cress | nucleus | 32.31 | 42.28 |
| AT4G18390.1 | Thale cress | nucleus | 35.14 | 40.82 |
| Solyc08g048390.1.1 | Tomato | nucleus | 35.85 | 39.28 |
| Solyc08g048370.2.1 | Tomato | cytosol | 29.25 | 38.04 |
| KRH58674 | Soybean | nucleus | 42.69 | 37.87 |
| KRH42567 | Soybean | nucleus | 41.04 | 37.18 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 25.94 | 36.67 |
| KRH11155 | Soybean | nucleus | 43.87 | 36.4 |
| KRH21093 | Soybean | nucleus | 43.87 | 34.96 |
| CDX78849 | Canola | nucleus, plastid | 18.87 | 33.47 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 18.87 | 33.47 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 18.63 | 28.21 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 19.1 | 26.3 |
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 11.32 | 23.53 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 22.41 | 21.11 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 13.92 | 20.0 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 14.15 | 16.95 |
| TraesCS5B01G205600.1 | Wheat | cytosol | 10.85 | 16.79 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G265800.1 | EnsemblPlantsGene:TraesCS2B01G265800 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF63 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| SEG:seg | MapMan:15.5.19 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:357922574..357923848
Molecular Weight (calculated)
45627.0 Da
IEP (calculated)
9.626
GRAVY (calculated)
-0.606
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSVAAAAV ELGKRGRPDD QYQEQDQDHG DAKRLALVPW PPHQQHPSSR IYRVSRGSGG KDRHSKVYTA KGIRDRRVRL SVATAIQFYD LQDRLGYDQP
101: SKAVEWLIKA AAAAIDKLPE LDAAAFPNHP ASASASANKQ SSALHAEADD SQPQQLTRSG CSSTSETSKG SVLSLSRSDS RVKARERARD RSASVKDKDD
201: SVTAAVHRRP PSAQAASFTE LLTGLAAATP AVAQHKQHNS WQQMTASATA DYLGFAQPRK SGHGMLHTFA SPAPHLGNIA PVSMAPAQHF SLSAGGGDSQ
301: TEMPHFSFSQ DHYMPVHAAP ASGPAVDYSL NFSMSSGLVG VNNTRGTLQS NSQPHLSGHH HHHHHHQQLQ RLSTPLDAPH IPFLFSPAVA VASPTTAESH
401: FGAAAALQLW EGFRHSDMKE KGKN
101: SKAVEWLIKA AAAAIDKLPE LDAAAFPNHP ASASASANKQ SSALHAEADD SQPQQLTRSG CSSTSETSKG SVLSLSRSDS RVKARERARD RSASVKDKDD
201: SVTAAVHRRP PSAQAASFTE LLTGLAAATP AVAQHKQHNS WQQMTASATA DYLGFAQPRK SGHGMLHTFA SPAPHLGNIA PVSMAPAQHF SLSAGGGDSQ
301: TEMPHFSFSQ DHYMPVHAAP ASGPAVDYSL NFSMSSGLVG VNNTRGTLQS NSQPHLSGHH HHHHHHQQLQ RLSTPLDAPH IPFLFSPAVA VASPTTAESH
401: FGAAAALQLW EGFRHSDMKE KGKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.