Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G153500.1 | Wheat | plastid | 97.06 | 91.68 |
| TraesCS7B01G055600.1 | Wheat | nucleus | 97.57 | 86.23 |
| OQU75979 | Sorghum | plastid | 81.48 | 78.77 |
| Zm00001d045080_P001 | Maize | plastid | 79.05 | 75.67 |
| HORVU7Hr1G031190.2 | Barley | nucleus | 90.93 | 75.26 |
| Zm00001d037086_P006 | Maize | nucleus, plastid | 78.16 | 69.15 |
| GSMUA_Achr8P31340_001 | Banana | nucleus | 61.3 | 60.0 |
| VIT_06s0004g00530.t01 | Wine grape | cytosol | 48.66 | 58.98 |
| PGSC0003DMT400033355 | Potato | cytosol | 6.64 | 57.14 |
| KRH23133 | Soybean | nucleus | 60.03 | 55.23 |
| Solyc03g006420.2.1 | Tomato | nucleus | 58.49 | 55.11 |
| KRH10202 | Soybean | nucleus | 58.37 | 53.51 |
| PGSC0003DMT400033353 | Potato | nucleus, plastid | 51.09 | 53.48 |
| AT4G14700.1 | Thale cress | plastid | 54.79 | 53.03 |
| AT4G12620.1 | Thale cress | plastid | 54.28 | 52.28 |
| CDY16697 | Canola | plastid | 53.9 | 52.16 |
| Bra029471.1-P | Field mustard | plastid | 54.02 | 52.03 |
| CDY62377 | Canola | plastid | 54.15 | 51.96 |
| VIT_06s0004g02050.t01 | Wine grape | nucleus | 58.49 | 50.44 |
| VIT_13s0175g00030.t01 | Wine grape | extracellular | 8.43 | 42.04 |
| TraesCS3A01G369000.1 | Wheat | plastid | 13.54 | 21.24 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:13.2.1.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | InterPro:ATPase_AAA_core | InterPro:BAH_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005524 | InterPro:IPR001025 |
| InterPro:IPR013083 | InterPro:IPR019787 | InterPro:ORC1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF00628 |
| PFAM:PF01426 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 | PANTHER:PTHR10763 | PANTHER:PTHR10763:SF23 |
| SMART:SM00249 | SMART:SM00439 | SUPFAM:SSF52540 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS7A01G151700 | EnsemblPlants:TraesCS7A01G151700.1 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00009 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:105494189..105500928
Molecular Weight (calculated)
87869.0 Da
IEP (calculated)
8.424
GRAVY (calculated)
-0.569
Length
783 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSATPTKS KSKSKPGPSP SKAAAAAAAQ MDFSTPSKPA PTPTPRRKSK PVPYAPPASP ATPSAVRRSR RLLDTPTKDL SEAALFETPA KPAPAPTLKR
101: KRAAPSPSPK TPARAEPKPK RQRRAPAKRA FYRKVVYDGG EFAAGDDVYV KRLEGAESDA EDPEEPEDCR VCFRAGGGVM VECDACLGGF HLRCVRPPLR
201: RVPEGDWACP YCEAERAGKV IDRPKPPVGK KIKRTAKEKL LDSDLWAARI ESLRREPDGA FWAKVRWYTI PEETAAGRQP HNLRRELYRT NALGDIEMES
301: IVRRCFVMSP KEYRDATNDG DDVFYCEYEY DVHWHNFKRL ADIDDEPETK EDPSDEPYNA ANDYNSDTDE DSEYDEEDEP AARCSARKNQ SNEKILAANS
401: WKGRIYGLQK IGIRKIPEHV RCHQKTALEK AKATLLLATL PKSLPCRDKE MEEISTFVKD AICNDHCLGR CLYIHGVPGT GKTMSVLAVM RKLRSEFDSG
501: ALRPYCFIEI NGLKLASPEN IYKLDLLLTR NQSVLYNILD WPTKPNSNLV IIGIANTMDL PEKLLPRISS RMGIQRLCFG PYNYRQLQEI ITSRLKGINA
601: FEDQAIEFAS RKVAAMSGDA RRALEICRRA AEFADYRVKQ FQQVEQTPSS ANTGNGFVCM GDIEDAIQEV FQAPHIQVMK NCPKFGKVIL AAMVHELYRS
701: GLGEVLFDKL AATVFSWCHV NRELLPGYDT LLKICCKLGE SKIVLCEEGT KHKLQKLQLN YPSDDVTFAL KESPDLPWLS KYL
101: KRAAPSPSPK TPARAEPKPK RQRRAPAKRA FYRKVVYDGG EFAAGDDVYV KRLEGAESDA EDPEEPEDCR VCFRAGGGVM VECDACLGGF HLRCVRPPLR
201: RVPEGDWACP YCEAERAGKV IDRPKPPVGK KIKRTAKEKL LDSDLWAARI ESLRREPDGA FWAKVRWYTI PEETAAGRQP HNLRRELYRT NALGDIEMES
301: IVRRCFVMSP KEYRDATNDG DDVFYCEYEY DVHWHNFKRL ADIDDEPETK EDPSDEPYNA ANDYNSDTDE DSEYDEEDEP AARCSARKNQ SNEKILAANS
401: WKGRIYGLQK IGIRKIPEHV RCHQKTALEK AKATLLLATL PKSLPCRDKE MEEISTFVKD AICNDHCLGR CLYIHGVPGT GKTMSVLAVM RKLRSEFDSG
501: ALRPYCFIEI NGLKLASPEN IYKLDLLLTR NQSVLYNILD WPTKPNSNLV IIGIANTMDL PEKLLPRISS RMGIQRLCFG PYNYRQLQEI ITSRLKGINA
601: FEDQAIEFAS RKVAAMSGDA RRALEICRRA AEFADYRVKQ FQQVEQTPSS ANTGNGFVCM GDIEDAIQEV FQAPHIQVMK NCPKFGKVIL AAMVHELYRS
701: GLGEVLFDKL AATVFSWCHV NRELLPGYDT LLKICCKLGE SKIVLCEEGT KHKLQKLQLN YPSDDVTFAL KESPDLPWLS KYL
001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL
Arabidopsis Description
ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.