Factsheet for Bra029471.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001110.1-P
Bra005184.1-P
Bra008604.1-P
Bra008860.1-P
Bra010789.1-P
Bra014795.1-P
Bra014797.1-P
Bra016292.1-P
Bra023389.1-P
Bra024679.1-P
Bra032365.1-P
Bra038492.1-P
Bra040393.1-P
Bra040743.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	Bra016292.1-P	AT1G26840.1	16179646
AT4G12620.1	Bra024679.1-P	AT1G26840.1	16179646
AT4G12620.1	Bra005184.1-P	AT2G37560.1	16179646
AT4G12620.1	Bra008860.1-P	AT5G13060.1	18818695
AT4G12620.1	Bra023389.1-P	AT5G13060.1	18818695
AT4G14700.1	Bra010789.1-P	AT1G30210.1	18818695
AT4G14700.1	Bra032365.1-P	AT1G30210.1	18818695
AT4G14700.1	Bra001110.1-P	AT3G04620.1	20706207
AT4G14700.1	Bra040393.1-P	AT3G04620.1	20706207
AT4G14700.1	Bra014795.1-P	AT3G54710.1	18818695
AT4G14700.1	Bra014797.1-P	AT3G54710.1	18818695
AT4G14700.1	Bra038492.1-P	AT4G16630.1	20706207
AT4G14700.1	Bra040743.1-P	AT4G16630.1	20706207
AT4G14700.1	Bra008860.1-P	AT5G13060.1	18818695
AT4G14700.1	Bra023389.1-P	AT5G13060.1	18818695
AT4G14700.1	Bra008604.1-P	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16697	Canola	plastid	97.79	98.27
CDY62377	Canola	plastid	97.05	96.69
AT4G14700.1	Thale cress	plastid	78.84	79.23
PGSC0003DMT400033355	Potato	cytosol	8.49	75.82
AT4G12620.1	Thale cress	plastid	73.06	73.06
VIT_06s0004g00530.t01	Wine grape	cytosol	53.38	67.18
Solyc03g006420.2.1	Tomato	nucleus	62.85	61.49
KRH10202	Soybean	nucleus	63.84	60.77
KRH23133	Soybean	nucleus	63.59	60.75
GSMUA_Achr8P31340_001	Banana	nucleus	59.53	60.5
PGSC0003DMT400033353	Potato	nucleus, plastid	53.63	58.29
VIT_06s0004g02050.t01	Wine grape	nucleus	63.47	56.83
OQU75979	Sorghum	plastid	55.97	56.17
TraesCS7D01G153500.1	Wheat	plastid	55.84	54.76
Zm00001d045080_P001	Maize	plastid	54.61	54.28
TraesCS7A01G151700.1	Wheat	plastid	52.03	54.02
VIT_13s0175g00030.t01	Wine grape	extracellular	10.33	53.5
TraesCS7B01G055600.1	Wheat	nucleus	56.33	51.69
Zm00001d037086_P006	Maize	nucleus, plastid	55.47	50.96
HORVU7Hr1G031190.2	Barley	nucleus	55.72	47.89
HORVU3Hr1G033880.2	Barley	plastid	10.33	32.31
Bra018366.1-P	Field mustard	cytosol, plastid	3.44	21.05
Bra015569.1-P	Field mustard	nucleus	12.67	20.85

Protein Annotations

Gene3D:1.10.8.1280	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:BAH_dom	EnsemblPlantsGene:Bra029471	EnsemblPlants:Bra029471.1	EnsemblPlants:Bra029471.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0005524	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083
InterPro:IPR019787	UniProt:M4EL04	InterPro:ORC1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00628
PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23
SMART:SM00249	SMART:SM00382	SMART:SM00439	SUPFAM:SSF52540	SUPFAM:SSF57903	UniParc:UPI000254277B
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT4G12620 (E=0.0) ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding

Coordinates

chrA09:+:17764592..17767033

Molecular Weight (calculated)

91922.8 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.535

Length

813 amino acids

Sequence
(BLAST)

001: MAASTPRAKT FQSPNKTPTN NIYRKSYLSP SSTTPSHLTP QTPQTLTPLR RSARHVSRKI DLGDIDQEIL NPPIEEMNLI RKRERAPRKQ PTDVLQTPKK
101: SKSNVDGDAE VSFSPVSPIR SEKKRKTAER SSNKRVHYTK VEFDSVEFQI GDDVYVKRKE DEEDDAEFED CRICFKSGSS NNVMLECDDC LGGFHLKCLK
201: PPLREVPEGD WICHFCQGHT LEAPKPPEGK KVARTAREKL LSSDLWAARI EKLWRGADGV YWVRARWYLI PEETASGRQA HNLKREVYLT NDFADVEMRS
301: VLRHCFVKSP KEFAKASNDG DDVFLCEYEY DVHWHSFKRL AELADGDCES DDHEWMKEEE EVGDSDDEEM EVEDEGSVRD SKSKRGLASS KAANSLKGRF
401: FGLDKVGAKR IPEHVRCHKQ SELEKAKATL LLATRPKSLP CRNKEMEEIT AFIKGSISDD QCLGRCMYIH GVPGTGKTVS VLSVMKNLKA EVEAGIVSPY
501: CFVEINGLKL ASPEKIYTVI YEALSGHRVG WKKALHSLNE RFSEGKRIGK EEEKPCILLI DELDLLVTRN QSVLYNILDW PTKPNSKLIV LGIANTMDLP
601: EKLLPRISSR MGIQRLCFGP YNHTQLQEII STRLKGIDAF EKQAIEFASR KVAAISGDAR RALEICRRAA EVADYRLKNN TSAKNQLVVM SDVEAAIQEM
701: FQAPHIQVMK SVSKLSKIYL TAMVHELYKT GMAETTFDRV ATTVSSLCGT NGEAFPGWDV LLKVGCELGE CRIILCEPGE RHRLQKLQLN FPSDDVAFAL
801: KDNKELPWLG NYL

Best Arabidopsis Sequence Match ( AT4G12620.1 )
(BLAST)

001: MASTPRAKTF KSPTKTPSNI YRKSYLSPSS TSHTPQTPET HTPLRRSARH VSRKIDLGND PIDAPGNDPI EGMNLIRKRE RAPRKPTTDV VPSKSKKTET
101: PKKKKKIDSF TPVSPIRSET IKKTKKKKRV YYNKVEFDET EFEIGDDVYV KRREDSNSDE EEDPEIEDCQ ICFKSDTNIM IECDDCLGGF HLKCLKPPLK
201: EVPEGDWICQ FCEVKKSGQS QTLDLPKPPE GKKLARTMRE KLLSGDLWAA RIDKLWKEVD DGVYWIRARW YMIPEETVSG RQPHNLKREL YLTNDFADIE
301: MECILRHCSV KCPKEFSKAS NDGDDVFLCE YEYDVHWRSF KRLAELADGD SDSDQEWNGR KEEEVDDSDE EMELDDEVLK SKRGGLTSAR GGANSRKGRF
401: FGVEKVGMKL IPEHVRCHKQ SELEKAKATL LLATRPKSLP CRSKEMEEIT SFIKGSISDD QCLGRCMYIH GVPGTGKTIS VLSVMKNLKA EVEEGSVSPY
501: CFVEINGLKL ASPENIYSVI YEALSGHRVG WKKALQCLNE RFAEGKRIGK EDEKPCILLI DELDLLVTRN QSVLYNILDW PTKPNSKLVV LGIANTMDLP
601: EKLLPRISSR MGIQRLCFGP YNHTQLQEII STRLNGIDAF EKTAIEFASR KVAAISGDAR RALEICRRAA EVADHRLNTN KSAKNQLVIM ADVEAAIQEM
701: FQAPHIQVMK SVSKLSKIFL TAMVHELYKT GMAETTFDRV ATTVSSICLT NGEAFPGWDI LLKIGCDLGE CRIILCEPGE KHRLQKLQLN FPSDDVAFAL
801: KDNKDLPWLA NYL

Arabidopsis Description

ORC1BUNE13 [Source:UniProtKB/TrEMBL;Acc:A0A178UTR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.