Factsheet for Bra016292.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005184.1-P
Bra008604.1-P
Bra016292.1-P
Bra024679.1-P
Bra029471.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	Bra016292.1-P	AT1G26840.1	16179646
AT1G26840.1	Bra024679.1-P	AT1G26840.1	16179646
AT1G26840.1	Bra005184.1-P	AT2G37560.1	16179646
AT1G26840.1	Bra029471.1-P	AT4G12620.1	16179646
AT1G26840.1	Bra008604.1-P	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46436	Canola	cytosol, nucleus, plastid	99.3	99.3
Bra024679.1-P	Field mustard	nucleus	88.38	90.61
AT1G26840.1	Thale cress	nucleus	89.44	89.44
PGSC0003DMT400008733	Potato	nucleus	66.9	66.9
Solyc05g007450.2.1	Tomato	nucleus	66.55	66.55
VIT_01s0026g02290.t01	Wine grape	nucleus	66.2	65.28
KRH70714	Soybean	nucleus	64.08	63.64
KRH74848	Soybean	nucleus	63.03	62.59
Os07t0628600-00	Rice	nucleus, plastid	63.73	61.36
Zm00001d022226_P002	Maize	nucleus, plastid	62.32	60.41
EER99752	Sorghum	nucleus, plastid	61.97	60.07
GSMUA_Achr11P...	Banana	nucleus	59.15	58.33
TraesCS2B01G183200.1	Wheat	nucleus, plastid	59.86	57.82
TraesCS2D01G163800.1	Wheat	nucleus, plastid	59.86	57.82
TraesCS2A01G157700.1	Wheat	nucleus, plastid	59.86	57.24
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	57.75	56.55
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	51.76	56.54
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	46.83	53.2
TraesCS5B01G221800.3	Wheat	nucleus	56.34	47.76

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	EnsemblPlantsGene:Bra016292	EnsemblPlants:Bra016292.1	EnsemblPlants:Bra016292.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:M4DIG5	InterPro:ORC6	InterPro:ORC6_met/pln
PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI000254602F	SEG:seg	:

Description

AT1G26840 (E=2e-138) ORC6, ATORC6 | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6); DNA binding

Coordinates

chrA08:+:17732460..17734163

Molecular Weight (calculated)

31802.5 Da

IEP (calculated)

9.397

GRAVY (calculated)

-0.304

Length

284 amino acids

Sequence
(BLAST)

001: MDISNIARKL DLSNNNLVVR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAASRLQVI FDRQAAVKLS GMSEKAYTRS FNSLQNVIGF KIKLNIKELA
101: IQFGCVRIIK SVQTILSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG VSKEKKDAKD
201: VKGNRELLDV LPGKRRLDDG GYSSDDESSC YKRHKKMEEA KYEDWKSTVV DSIKKNPEKG AKKVIQTSLS FSMKDETKEL QVES

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.