Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45005 | Canola | nucleus | 89.79 | 89.79 |
| CDY46436 | Canola | cytosol, nucleus, plastid | 89.44 | 89.44 |
| CDY50731 | Canola | nucleus | 89.44 | 89.44 |
| Bra016292.1-P | Field mustard | cytosol, nucleus, plastid | 89.44 | 89.44 |
| Bra024679.1-P | Field mustard | nucleus | 85.92 | 88.09 |
| CDY16197 | Canola | nucleus | 88.03 | 88.03 |
| PGSC0003DMT400008733 | Potato | nucleus | 66.9 | 66.9 |
| Solyc05g007450.2.1 | Tomato | nucleus | 66.2 | 66.2 |
| CDY31509 | Canola | extracellular | 29.93 | 64.89 |
| KRH70714 | Soybean | nucleus | 65.14 | 64.69 |
| VIT_01s0026g02290.t01 | Wine grape | nucleus | 65.14 | 64.24 |
| KRH74848 | Soybean | nucleus | 63.38 | 62.94 |
| Zm00001d022226_P002 | Maize | nucleus, plastid | 62.32 | 60.41 |
| GSMUA_Achr11P... | Banana | nucleus | 60.92 | 60.07 |
| EER99752 | Sorghum | nucleus, plastid | 61.97 | 60.07 |
| Os07t0628600-00 | Rice | nucleus, plastid | 62.32 | 60.0 |
| TraesCS2B01G183200.1 | Wheat | nucleus, plastid | 60.56 | 58.5 |
| TraesCS2D01G163800.1 | Wheat | nucleus, plastid | 60.56 | 58.5 |
| TraesCS2A01G157700.1 | Wheat | nucleus, plastid | 60.56 | 57.91 |
| HORVU2Hr1G028500.1 | Barley | mitochondrion, nucleus | 58.8 | 57.59 |
| TraesCS5A01G222800.2 | Wheat | mitochondrion, nucleus | 51.06 | 55.77 |
| TraesCS5D01G230600.1 | Wheat | mitochondrion, nucleus | 48.59 | 55.2 |
| TraesCS5B01G221800.3 | Wheat | nucleus | 55.28 | 46.87 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.2.1.1.6 | EntrezGene:839227 | UniProt:A0A178WC62 | ProteinID:AAD14490.1 | ProteinID:AEE30748.1 |
| EMBL:AJ575584 | ArrayExpress:AT1G26840 | EnsemblPlantsGene:AT1G26840 | RefSeq:AT1G26840 | TAIR:AT1G26840 | RefSeq:AT1G26840-TAIR-G |
| EnsemblPlants:AT1G26840.1 | TAIR:AT1G26840.1 | GO:GO:0000808 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003688 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006270 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009555 | GO:GO:0009987 |
| RefSeq:NP_174006.2 | ProteinID:OAP16030.1 | InterPro:ORC6 | Symbol:ORC6 | InterPro:ORC6_met/pln | PFAM:PD315657 |
| PFAM:PF05460 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR13394 | UniProt:Q9ZVH3 |
| UniParc:UPI00003B92B1 | SEG:seg | : | : | : | : |
Description
ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
Coordinates
chr1:+:9298670..9300800
Molecular Weight (calculated)
31771.5 Da
IEP (calculated)
9.846
GRAVY (calculated)
-0.336
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.