Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G183200.1 | Wheat | nucleus, plastid | 78.51 | 89.46 |
| HORVU2Hr1G028500.1 | Barley | mitochondrion, nucleus | 75.22 | 86.9 |
| TraesCS5D01G230600.1 | Wheat | mitochondrion, nucleus | 63.88 | 85.6 |
| EER99752 | Sorghum | nucleus, plastid | 71.64 | 81.91 |
| Os07t0628600-00 | Rice | nucleus, plastid | 71.64 | 81.36 |
| TraesCS5A01G222800.2 | Wheat | mitochondrion, nucleus | 62.39 | 80.38 |
| Zm00001d022226_P002 | Maize | nucleus, plastid | 68.96 | 78.84 |
| GSMUA_Achr11P... | Banana | nucleus | 54.93 | 63.89 |
| VIT_01s0026g02290.t01 | Wine grape | nucleus | 54.93 | 63.89 |
| KRH70714 | Soybean | nucleus | 52.54 | 61.54 |
| KRH74848 | Soybean | nucleus | 50.75 | 59.44 |
| PGSC0003DMT400008733 | Potato | nucleus | 48.96 | 57.75 |
| Solyc05g007450.2.1 | Tomato | nucleus | 48.96 | 57.75 |
| CDY50731 | Canola | nucleus | 48.06 | 56.69 |
| CDY45005 | Canola | nucleus | 48.06 | 56.69 |
| CDY46436 | Canola | cytosol, nucleus, plastid | 47.76 | 56.34 |
| CDY16197 | Canola | nucleus | 47.76 | 56.34 |
| Bra016292.1-P | Field mustard | cytosol, nucleus, plastid | 47.76 | 56.34 |
| Bra024679.1-P | Field mustard | nucleus | 46.57 | 56.32 |
| AT1G26840.1 | Thale cress | nucleus | 46.87 | 55.28 |
| CDY31509 | Canola | extracellular | 19.4 | 49.62 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.2.1.1.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:ORC6 | InterPro:ORC6_met/pln | PFAM:PD315657 | PFAM:PF05460 | PANTHER:PTHR13394 | EnsemblPlantsGene:TraesCS5B01G221800 |
| EnsemblPlants:TraesCS5B01G221800.3 | TIGR:cd11583 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:+:396432200..396434270
Molecular Weight (calculated)
37428.2 Da
IEP (calculated)
10.006
GRAVY (calculated)
-0.377
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSAIAARL GLSGSRPVVR KAAELRRLCD INFDSSVLGI GEVCKAIICL EITATKFQVI FDRSEAVRMS GMSEKAYIRS FNALQNGLGV KTTLDVRELG
101: IQFGCVRLIP FVQKGLVLYK ERFLAALPPP RRSSTDFGRQ VFTAAAFYLC AKRHKLKVDK LKLIDLCGTS SSEFTTVLTS TGDICFDVFG IAKEKKDPTS
201: IKGNRKLLDV LPSKRKHEDD SDHSDESSGD DNDDELDLPT HKRHKKMEKQ AYNQWKSSVI STNKQTKPGW YRNTLQLLTS LCMPLAPTHC PSAKMTSLAG
301: FSYTLRSPGN KLSSTSRRNC QTPPWKYHHQ LTKLA
101: IQFGCVRLIP FVQKGLVLYK ERFLAALPPP RRSSTDFGRQ VFTAAAFYLC AKRHKLKVDK LKLIDLCGTS SSEFTTVLTS TGDICFDVFG IAKEKKDPTS
201: IKGNRKLLDV LPSKRKHEDD SDHSDESSGD DNDDELDLPT HKRHKKMEKQ AYNQWKSSVI STNKQTKPGW YRNTLQLLTS LCMPLAPTHC PSAKMTSLAG
301: FSYTLRSPGN KLSSTSRRNC QTPPWKYHHQ LTKLA
001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
Arabidopsis Description
ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.