Factsheet for HORVU2Hr1G028500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G028500.1
HORVU2Hr1G029330.11
HORVU3Hr1G033880.2
HORVU7Hr1G031190.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	HORVU2Hr1G028500.1	AT1G26840.1	16179646
AT1G26840.1	HORVU3Hr1G033880.2	AT4G12620.1	16179646
AT1G26840.1	HORVU7Hr1G031190.2	AT4G12620.1	16179646
AT1G26840.1	HORVU2Hr1G029330.11	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G163800.1	Wheat	nucleus, plastid	97.24	95.92
TraesCS2B01G183200.1	Wheat	nucleus, plastid	97.24	95.92
TraesCS2A01G157700.1	Wheat	nucleus, plastid	97.24	94.95
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	77.59	90.0
Os07t0628600-00	Rice	nucleus, plastid	87.93	86.44
EER99752	Sorghum	nucleus, plastid	86.55	85.67
Zm00001d022226_P002	Maize	nucleus, plastid	84.83	83.96
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	70.34	78.46
TraesCS5B01G221800.3	Wheat	nucleus	86.9	75.22
GSMUA_Achr11P...	Banana	nucleus	65.52	65.97
VIT_01s0026g02290.t01	Wine grape	nucleus	64.83	65.28
KRH70714	Soybean	nucleus	62.41	63.29
KRH74848	Soybean	nucleus	60.34	61.19
PGSC0003DMT400008733	Potato	nucleus	58.97	60.21
Solyc05g007450.2.1	Tomato	nucleus	58.97	60.21
CDY50731	Canola	nucleus	57.93	59.15
AT1G26840.1	Thale cress	nucleus	57.59	58.8
Bra024679.1-P	Field mustard	nucleus	55.86	58.48
CDY45005	Canola	nucleus	57.24	58.45
CDY16197	Canola	nucleus	57.24	58.45
CDY46436	Canola	cytosol, nucleus, plastid	56.55	57.75
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	56.55	57.75
CDY31509	Canola	extracellular	23.79	52.67

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	UniProt:A0A287HIC2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009555	GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G028500	EnsemblPlants:HORVU2Hr1G028500.1	InterPro:ORC6
InterPro:ORC6_met/pln	PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI000B46A8D1	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:97036942..97039358

Molecular Weight (calculated)

31879.3 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.462

Length

290 amino acids

Sequence
(BLAST)

001: XXXXLSGSRP VVRKAAELRR LCDINFDSSV LGIGEVCKAI ICLEIAATKF QVIFDRSEAV RMSGMSEKAY IRSFNALQNG LGVKTTLDVR ELGIQFGCVR
101: LIPFVQKGLA LYKERFLAAL PPSRRSSTDF GRPVFTAAAF YLCAKRHKLK VDKLKLIDLC GTSSSEFTTV STSMGDLCFD VFGIAKEKKD PTSIKGNREL
201: LDVLPSKRKH EDDSDHSDES SGDDNDDELD LPTHKRHKKM EKQAYNQWKS SVISTNKQTK PDPTKPRKQA QLNFKKKLPD AALEVPPPAN

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.