CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05698
KRH10202
KRH15345
KRH23133
KRH23980
KRH70714
KRH74848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	KRH70714	AT1G26840.1	16179646
AT1G26840.1	KRH74848	AT1G26840.1	16179646
AT1G26840.1	KRH05698	AT2G37560.1	16179646
AT1G26840.1	KRH15345	AT2G37560.1	16179646
AT1G26840.1	KRH10202	AT4G12620.1	16179646
AT1G26840.1	KRH23133	AT4G12620.1	16179646
AT1G26840.1	KRH23980	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74848	Soybean	nucleus	93.36	93.36
VIT_01s0026g02290.t01	Wine grape	nucleus	72.38	71.88
CDY50731	Canola	nucleus	65.73	66.2
PGSC0003DMT400008733	Potato	nucleus	65.38	65.85
Bra024679.1-P	Field mustard	nucleus	63.64	65.7
CDY16197	Canola	nucleus	65.03	65.49
Solyc05g007450.2.1	Tomato	nucleus	65.03	65.49
AT1G26840.1	Thale cress	nucleus	64.69	65.14
CDY45005	Canola	nucleus	64.34	64.79
Zm00001d022226_P002	Maize	nucleus, plastid	66.08	64.51
CDY46436	Canola	cytosol, nucleus, plastid	63.99	64.44
Os07t0628600-00	Rice	nucleus, plastid	66.43	64.41
GSMUA_Achr11P...	Banana	nucleus	64.69	64.24
EER99752	Sorghum	nucleus, plastid	65.73	64.16
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	63.64	64.08
TraesCS2B01G183200.1	Wheat	nucleus, plastid	65.03	63.27
TraesCS2D01G163800.1	Wheat	nucleus, plastid	65.03	63.27
TraesCS2A01G157700.1	Wheat	nucleus, plastid	65.38	62.96
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	63.29	62.41
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	53.15	60.8
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	54.9	60.38
CDY31509	Canola	extracellular	24.48	53.44
TraesCS5B01G221800.3	Wheat	nucleus	61.54	52.54

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	EMBL:ACUP02000791	EnsemblPlantsGene:GLYMA_02G106600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003688	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006270
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JE37	EnsemblPlants:KRH70714
ProteinID:KRH70714	ProteinID:KRH70714.1	InterPro:ORC6	InterPro:ORC6_met/pln	PFAM:PD315657	PFAM:PF05460
PANTHER:PTHR13394	UniParc:UPI0001BA86B2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:10154074..10157337

Molecular Weight (calculated)

32009.7 Da

IEP (calculated)

9.959

GRAVY (calculated)

-0.403

Length

286 amino acids

Sequence
(BLAST)

001: MDVSELAKKL GLSDSKLLVR KAAELRRLCD VQFDSSVIGV GEVAKSLICL EIAATRLGVL FDRSSAVRLS GMSERAYIRS YNSLHNGLGV KMKLDVRELA
101: IQFGCVRIIP FVRDGLKLYK DRFVSSLPAS RRASADFTRP VFTAVAFYLC AKKHKLKVDK LKLIELCGTS ESEFSSVSAT MKDLCHDVFG VAKEKKDPKE
201: VQSNRDLLDV LPSKRKAEDG GYSSEDGPEL SSYKKAKKME KHDYEKWKSS VLSSNKQNKK APCKRTRQTS LNFLKEPSDN QELEAI

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.