CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05698
KRH10202
KRH15345
KRH23133
KRH23980
KRH70714
KRH74848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	KRH70714	AT1G26840.1	16179646
AT2G37560.1	KRH74848	AT1G26840.1	16179646
AT2G37560.1	KRH05698	AT2G37560.1	16179646
AT2G37560.1	KRH15345	AT2G37560.1	16179646
AT2G37560.1	KRH10202	AT4G12620.1	16179646
AT2G37560.1	KRH23133	AT4G12620.1	16179646
AT2G37560.1	KRH23980	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05698	Soybean	endoplasmic reticulum, extracellular	74.32	93.15
PGSC0003DMT400069464	Potato	nucleus	68.31	68.87
Solyc06g073510.2.1	Tomato	nucleus	68.03	68.59
VIT_18s0001g10740.t01	Wine grape	nucleus	57.92	67.3
CDX74950	Canola	nucleus	64.48	65.01
Bra005184.1-P	Field mustard	nucleus	64.21	64.74
AT2G37560.1	Thale cress	nucleus	63.93	64.46
CDY70246	Canola	nucleus	63.66	64.19
GSMUA_Achr10P...	Banana	nucleus	52.73	62.87
Os03t0184700-01	Rice	nucleus	60.66	58.58
TraesCS4A01G003800.1	Wheat	nucleus	60.93	58.53
Zm00001d017423_P001	Maize	nucleus	60.11	58.36
EER93232	Sorghum	nucleus	59.84	58.09
TraesCS4D01G299900.1	Wheat	nucleus	60.38	58.01
TraesCS4B01G301600.1	Wheat	nucleus	60.11	57.89
EER92739	Sorghum	nucleus	59.02	57.45

Protein Annotations

EntrezGene:100779248	MapMan:13.2.1.1.2	EMBL:ACUP02008578	EnsemblPlantsGene:GLYMA_14G082100	GO:GO:0000808	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003688	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1M8L4	EnsemblPlants:KRH15345
ProteinID:KRH15345	ProteinID:KRH15345.1	InterPro:ORC2	PFAM:PF04084	PANTHER:PTHR14052	UniParc:UPI000233B6D7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:7092487..7095535

Molecular Weight (calculated)

41771.7 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.226

Length

366 amino acids

Sequence
(BLAST)

001: MDANGNWEED DDEEFEFSRN YFLAKELASS SAKKSKHKLT DIDVVDEQEL RDAASKIEPN HEYEITLLLD SYKTMYPEWI FALRCGFGLL MYGFGSKKVL
101: IEDFASTELT EYSVVVINGY LQTINLKQVV IALAEVLWDQ MKAKQRVSHR DLPKSQQPSN SQSMDDLLTF LDQAEIEDGD FFVCVVIHNI DGPGLRDSET
201: QRYLARLAAC ARIRVVASID HVNAPLFWDK NMAHTQFNWC WYHVPTFAPY KVEGMFYPMI LAHGSASQTV KTATIVLLSL TRNAQSVFKI LAEHQLSHPD
301: EGMPISDLYS VCRERFLVSS QITLNSHLTE FKDHELVKIK KHSDGQDCLH IPLTAEALQK VVLEIN

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.