Factsheet for Zm00001d017423_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017423_P001
Zm00001d022226_P002
Zm00001d031073_P001
Zm00001d037086_P006
Zm00001d045080_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	Zm00001d022226_P002	AT1G26840.1	16179646
AT2G37560.1	Zm00001d017423_P001	AT2G37560.1	16179646
AT2G37560.1	Zm00001d037086_P006	AT4G12620.1	16179646
AT2G37560.1	Zm00001d045080_P001	AT4G12620.1	16179646
AT2G37560.1	Zm00001d031073_P001	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93232	Sorghum	nucleus	93.37	93.37
EER92739	Sorghum	nucleus	92.84	93.09
TraesCS4A01G003800.1	Wheat	nucleus	87.53	86.61
TraesCS4D01G299900.1	Wheat	nucleus	87.27	86.35
TraesCS4B01G301600.1	Wheat	nucleus	86.74	86.05
Os03t0184700-01	Rice	nucleus	85.15	84.7
GSMUA_Achr10P...	Banana	nucleus	53.32	65.47
KRH05698	Soybean	endoplasmic reticulum, extracellular	48.81	63.01
CDY70246	Canola	nucleus	60.48	62.81
Bra005184.1-P	Field mustard	nucleus	59.95	62.26
CDX74950	Canola	nucleus	59.95	62.26
AT2G37560.1	Thale cress	nucleus	59.15	61.43
PGSC0003DMT400069464	Potato	nucleus	58.62	60.88
Solyc06g073510.2.1	Tomato	nucleus	58.36	60.61
KRH15345	Soybean	nucleus	58.36	60.11
VIT_18s0001g10740.t01	Wine grape	nucleus	48.81	58.41

Protein Annotations

EnsemblPlants:Zm00001d017423_P001	EnsemblPlants:Zm00001d017423_T001	EnsemblPlantsGene:Zm00001d017423	GO:GO:0000808	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:ORC2	PANTHER:PTHR14052	PFAM:PF04084
ProteinID:AQK73136.1	SEG:seg	UniParc:UPI000220D84F	UniProt:A0A1D6HER2	MapMan:13.2.1.1.2	:

Description

origin recognition complex2Origin recognition complex subunit 2

Coordinates

chr5:-:195641813..195645583

Molecular Weight (calculated)

42516.8 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.354

Length

377 amino acids

Sequence
(BLAST)

001: MAPRGGREEA SSGSEDEEEE AGFSRSYFLA KEKEPSSVKK RARAAAGKLS DLNLVDEQVL RASLAQIPPK HKEEVESLTR SYKDQYRNWL FELRCGFGLL
101: MYGFGSKKQL LEDFASTTLT NFTVVVINGY LPAVNLKQVI ATIAEMFWDQ TKAKRRKRAG TRSQLSQQFP SQSTEGIISF LMRQTSDDVD DHVCLLIHNI
201: DGPALRDTES QQCLAQISCC PQIRVVASID HVNAPLLWDK KMVHKQFKWS WYHVPTFAPY KVEGVFYPLI LASGGHAQTT KTALVVLQSL TPNAQSVFRV
301: LAEYQLANEK EEGMPVSSLY TKCRERFLVS SQVTLNAHLT EFKDHDLVKT RKHSDGQDCL RIPLVSDALE KLLQELA

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.