CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69432
CDX74950
CDY16197
CDY16697
CDY31509
CDY45005
CDY46436
CDY49642
CDY50731
CDY62377
CDY70246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	CDY16197	AT1G26840.1	16179646
AT2G37560.1	CDY31509	AT1G26840.1	16179646
AT2G37560.1	CDY45005	AT1G26840.1	16179646
AT2G37560.1	CDY46436	AT1G26840.1	16179646
AT2G37560.1	CDY50731	AT1G26840.1	16179646
AT2G37560.1	CDX74950	AT2G37560.1	16179646
AT2G37560.1	CDY70246	AT2G37560.1	16179646
AT2G37560.1	CDY16697	AT4G12620.1	16179646
AT2G37560.1	CDY62377	AT4G12620.1	16179646
AT2G37560.1	CDX69432	AT5G16690.1	16179646
AT2G37560.1	CDY49642	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74950	Canola	nucleus	95.32	95.32
AT2G37560.1	Thale cress	nucleus	88.15	88.15
PGSC0003DMT400069464	Potato	nucleus	66.67	66.67
Solyc06g073510.2.1	Tomato	nucleus	66.67	66.67
VIT_18s0001g10740.t01	Wine grape	nucleus	57.58	66.35
KRH05698	Soybean	endoplasmic reticulum, extracellular	52.89	65.75
GSMUA_Achr10P...	Banana	nucleus	54.27	64.17
KRH15345	Soybean	nucleus	64.19	63.66
Zm00001d017423_P001	Maize	nucleus	62.81	60.48
EER93232	Sorghum	nucleus	62.26	59.95
EER92739	Sorghum	nucleus	61.98	59.84
TraesCS4A01G003800.1	Wheat	nucleus	61.71	58.79
TraesCS4D01G299900.1	Wheat	nucleus	61.71	58.79
TraesCS4B01G301600.1	Wheat	nucleus	61.43	58.68
Os03t0184700-01	Rice	nucleus	60.61	58.05

Protein Annotations

MapMan:13.2.1.1.2	GO:A0A078JXN3	UniProt:A0A078JXN3	EnsemblPlants:CDY70246	ProteinID:CDY70246	ProteinID:CDY70246.1
GO:GO:0000808	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00097610001	InterPro:ORC2	PFAM:PF04084	PANTHER:PTHR14052	UniParc:UPI0004EF2E94	:

Description

BnaCnng67410DBnaCnng67410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXN3]

Coordinates

chrLK041586:-:468..2015

Molecular Weight (calculated)

40989.7 Da

IEP (calculated)

5.433

GRAVY (calculated)

-0.264

Length

363 amino acids

Sequence
(BLAST)

001: MEETDNIEED EFGFSRNYFL AKELGGSSKR SARKLSDINL VDEQELRETA FNIETKHEKE ISELMNEYKT MYPKWVFELR CGFGLLMYGF GSKKGLLEDF
101: ASSSLTEYSV VVINGYLPSV NLKQVLLAIA ELLSEQLKSR RRSSVSLAKG QEAFPSRSVD VILSFLHGSQ SEDKDCFICV VVHNIDGPAL RDPESQQTLA
201: QLASCSHIRI IASIDHVNAT LLWDKKMVHK QFNWLWHHVP TFAPYKVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNAQ NVFKILADYQ LSHPDEDGMP
301: TEDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLS SDALRQLLLD LSQ

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.