CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69432
CDX74950
CDY16197
CDY16697
CDY31509
CDY45005
CDY46436
CDY49642
CDY50731
CDY62377
CDY70246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	CDY16197	AT1G26840.1	16179646
AT1G26840.1	CDY31509	AT1G26840.1	16179646
AT1G26840.1	CDY45005	AT1G26840.1	16179646
AT1G26840.1	CDY46436	AT1G26840.1	16179646
AT1G26840.1	CDY50731	AT1G26840.1	16179646
AT1G26840.1	CDX74950	AT2G37560.1	16179646
AT1G26840.1	CDY70246	AT2G37560.1	16179646
AT1G26840.1	CDY16697	AT4G12620.1	16179646
AT1G26840.1	CDY62377	AT4G12620.1	16179646
AT1G26840.1	CDX69432	AT5G16690.1	16179646
AT1G26840.1	CDY49642	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16197	Canola	nucleus	65.65	30.28
CDY46436	Canola	cytosol, nucleus, plastid	65.65	30.28
CDY45005	Canola	nucleus	64.89	29.93
CDY50731	Canola	nucleus	64.89	29.93
AT1G26840.1	Thale cress	nucleus	64.89	29.93
VIT_01s0026g02290.t01	Wine grape	nucleus	58.02	26.39
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	51.15	25.77
KRH70714	Soybean	nucleus	53.44	24.48
EER99752	Sorghum	nucleus, plastid	54.2	24.23
Os07t0628600-00	Rice	nucleus, plastid	54.2	24.07
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	45.8	24.0
GSMUA_Achr11P...	Banana	nucleus	52.67	23.96
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	52.67	23.79
PGSC0003DMT400008733	Potato	nucleus	51.15	23.59
Solyc05g007450.2.1	Tomato	nucleus	51.15	23.59
TraesCS2A01G157700.1	Wheat	nucleus, plastid	53.44	23.57
TraesCS2B01G183200.1	Wheat	nucleus, plastid	52.67	23.47
TraesCS2D01G163800.1	Wheat	nucleus, plastid	52.67	23.47
KRH74848	Soybean	nucleus	51.15	23.43
Zm00001d022226_P002	Maize	nucleus, plastid	51.91	23.21
TraesCS5B01G221800.3	Wheat	nucleus	49.62	19.4

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	GO:A0A078H245	UniProt:A0A078H245	EnsemblPlants:CDY31509	ProteinID:CDY31509
ProteinID:CDY31509.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00047813001	InterPro:ORC6_met/pln	PFAM:PD315657
PANTHER:PTHR13394	TMHMM:TMhelix	UniParc:UPI0004EE8708	:	:	:

Description

BnaC05g16180DBnaC05g16180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H245]

Coordinates

chrLK032273:+:410778..411724

Molecular Weight (calculated)

14753.4 Da

IEP (calculated)

7.682

GRAVY (calculated)

0.324

Length

131 amino acids

Sequence
(BLAST)

001: MHGMCLIKCL IETPGYVLLC LFGVWLMSGY KERFLASLPV FTPAAFYLCA KKQKLKVDKL RLVEVCGTSE SEFSCVFTSM IDLCYDCVGV SKEKKDAKEV
101: KGNRELLDVL PGKIFEDVQS FLSISHMVLT H

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.